Jatropha Genome Database

JcPR02GC7KU.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcPR02GC7KU.10 + phase: 1 /pseudo/partial
         (169 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29854.m001136 Axial regulator YABBY2, putative                        141   1e-33
29927.m000626 Axial regulator YABBY5, putative                         60   4e-09

>29854.m001136 Axial regulator YABBY2, putative
          Length = 573

 Score =  141 bits (71), Expect = 1e-33
 Identities = 116/129 (89%), Gaps = 4/129 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccccagagaagagacagcgtgttccttctgcatataacaggttcatcaaggaggaaaatt 60
           |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||   
Sbjct: 314 ccccagagaagagacaacgtgttccttctgcatataacaggttcatcaaggaggaaa--- 370

                                                                       
Query: 61  tcaaaaggattaaggctagtaatcctgatatcagccacagggaagctttttagtacagca 120
           |  ||||||| ||||| || |||||||| |||||||||||||||||  ||||| ||||||
Sbjct: 371 tacaaaggatcaaggccagcaatcctgacatcagccacagggaagc-ctttagcacagca 429

                    
Query: 121 gcaaaaaat 129
           |||||||||
Sbjct: 430 gcaaaaaat 438


>29927.m000626 Axial regulator YABBY5, putative
          Length = 558

 Score = 60.0 bits (30), Expect = 4e-09
 Identities = 85/101 (84%), Gaps = 3/101 (2%)
 Strand = Plus / Plus

                                                                       
Query: 6   gagaagagacagcgtgttccttctgcatataacaggttcatcaaggaggaaaatttcaaa 65
           |||||||| ||||| || |||||||||||||||  |||||| |||||||| |  ||| | 
Sbjct: 325 gagaagaggcagcgagtaccttctgcatataaccagttcataaaggaggaga--ttc-ag 381

                                                    
Query: 66  aggattaaggctagtaatcctgatatcagccacagggaagc 106
           ||||| ||||| | ||||||||| ||||||||||| |||||
Sbjct: 382 aggatcaaggcaaataatcctgaaatcagccacagagaagc 422