Jatropha Genome Database

JcCD0162764.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCD0162764.10 + phase: 1 /partial/short
         (143 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29908.m006006 Endoplasmic reticulum-Golgi intermediate compartme...    88   2e-17

>29908.m006006 Endoplasmic reticulum-Golgi intermediate compartment
           protein, putative
          Length = 1161

 Score = 87.7 bits (44), Expect = 2e-17
 Identities = 92/108 (85%)
 Strand = Plus / Plus

                                                                       
Query: 36  gacgcctatccgaaaatcaacgaggacttctacagccgtacattctccggcggtgttatc 95
           ||||| ||||| |||||||| || || ||||| ||||||||  ||||||| || ||||||
Sbjct: 34  gacgcatatccaaaaatcaatgaagatttctatagccgtacgctctccggtggcgttatc 93

                                                           
Query: 96  actatcgcctcttctattgtcatgcttctcctcttcatctctgagctc 143
           ||| ||||||| |||||| | ||||||||||| ||||| |||||||||
Sbjct: 94  actctcgcctcctctattcttatgcttctccttttcatttctgagctc 141