Jatropha Genome Database

JcCD0139939.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCD0139939.10 - phase: 0 /partial
         (168 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29613.m000358 omega-6 desaturase, endoplasmic reticulum               127   2e-29
28035.m000362 oleate 12-hydroxylase                                    52   1e-06

>29613.m000358 omega-6 desaturase, endoplasmic reticulum
          Length = 1152

 Score =  127 bits (64), Expect = 2e-29
 Identities = 112/128 (87%)
 Strand = Plus / Plus

                                                                        
Query: 1    gtagctcaccatttgttttctacaatgccacattatcatgcaatggaggctacaaatgcc 60
            ||||||||||| ||||| || |||||||| |||||||||||||||||||||||||| || 
Sbjct: 946  gtagctcaccacttgttctcaacaatgccgcattatcatgcaatggaggctacaaaggct 1005

                                                                        
Query: 61   ataaaaccaattctgggagaatattaccaattcgacaggactcctttcttcaaggcaatg 120
            || || |||||| ||||||| || |||||||||||| ||||| | ||||  |||||||||
Sbjct: 1006 atcaagccaattttgggagagtactaccaattcgacgggacttcgttctataaggcaatg 1065

                    
Query: 121  tggagaga 128
            ||||||||
Sbjct: 1066 tggagaga 1073


>28035.m000362 oleate 12-hydroxylase
          Length = 1164

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                              
Query: 1    gtagctcaccatttgttttctacaatgccacattatcatgcaatggaggc 50
            |||||||| ||| | ||| ||||| |||||||||| ||||||||||||||
Sbjct: 958  gtagctcatcatctctttgctacagtgccacattaccatgcaatggaggc 1007