Jatropha Genome Database

JcCD0138510.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCD0138510.10 + phase: 0 /pseudo/partial
         (218 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30174.m008934 mads box protein, putative                              105   1e-22
30138.m003939 mads box protein, putative                               52   1e-06

>30174.m008934 mads box protein, putative
          Length = 735

 Score =  105 bits (53), Expect = 1e-22
 Identities = 89/101 (88%)
 Strand = Plus / Plus

                                                                       
Query: 4   ttgttgaagaaagcttacgagctttctgttctctgcgatgctgaagttgcccttattatc 63
           |||||||| |||||||| ||||| ||||| || || |||||||| ||||| |||||||||
Sbjct: 82  ttgttgaaaaaagcttatgagctgtctgtgctttgtgatgctgaggttgctcttattatc 141

                                                    
Query: 64  ttctctagtcgtggcaagctttatgaatttggtagtgctgg 104
           ||||| |||||||| ||||| ||||||||||||| ||||||
Sbjct: 142 ttctccagtcgtggaaagctctatgaatttggtaatgctgg 182


>30138.m003939 mads box protein, putative
          Length = 735

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                             
Query: 4   ttgttgaagaaagcttacgagctttctgttctctgcgatgctgaagttgc 53
           ||||||||||||||  | ||| | |||||||| |||||||||||||||||
Sbjct: 82  ttgttgaagaaagcccatgagatctctgttctttgcgatgctgaagttgc 131