Jatropha Genome Database

JcCD0119024.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCD0119024.10 - phase: 0 /pseudo/partial
         (338 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29851.m002389 Stem-specific protein TSJT1, putative                   260   5e-69
28460.m000084 Stem-specific protein TSJT1, putative                    78   4e-14

>29851.m002389 Stem-specific protein TSJT1, putative
          Length = 768

 Score =  260 bits (131), Expect = 5e-69
 Identities = 285/331 (86%), Gaps = 4/331 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   tagacagtatgggctatcaaaaggaaccaatgaggctatgtttgtaattgaagcatatag 64
           |||||| |||||| |||| || |||||||||||||| |||||||||||||||||||| | 
Sbjct: 282 tagacaatatgggttatcgaagggaaccaatgaggccatgtttgtaattgaagcatacaa 341

                                                                       
Query: 65  gaccttacgtgaccgtgggccatacccggcccatcaagtcctcaaggattttggagggca 124
           |||| ||||||| |||||||||||||| || || || || ||||||||  | ||| ||||
Sbjct: 342 gaccctacgtgatcgtgggccatacccagcacaccaggtgctcaaggaact-ggaaggca 400

                                                                       
Query: 125 cttttcggattttgtggtttatgacactaaagctggacatgtcttttgctgctctgggtg 184
           | || ||| ||  ||||| ||||| || ||| |||||||||||||| || || |||||||
Sbjct: 401 cctt-cggcttc-gtggtctatgataccaaatctggacatgtcttt-gcagccctgggtg 457

                                                                       
Query: 185 cagaagaaggggtggaaatgtactggggaattgcaggtgatggttctgttgtaatatctg 244
           || | ||||| ||||   | |||||||| ||||||| |||||||||||| || |||||||
Sbjct: 458 caaatgaaggtgtggggctatactggggcattgcagctgatggttctgtggtgatatctg 517

                                                                       
Query: 245 acaacttggagggcataaaaggaagctgtgcaaagtcatttgcaccatttccaaaagggt 304
           |||||||||||| |||||||||||||||||| |||||||||||||||||||||  |||||
Sbjct: 518 acaacttggaggtcataaaaggaagctgtgccaagtcatttgcaccatttccatcagggt 577

                                          
Query: 305 gcatgttccatagtgaacaagggttgatgag 335
           |||||||||| ||||||||||||||||||||
Sbjct: 578 gcatgttccacagtgaacaagggttgatgag 608


>28460.m000084 Stem-specific protein TSJT1, putative
          Length = 681

 Score = 77.8 bits (39), Expect = 4e-14
 Identities = 99/119 (83%)
 Strand = Plus / Plus

                                                                       
Query: 203 tgtactggggaattgcaggtgatggttctgttgtaatatctgacaacttggagggcataa 262
           |||||||||||||||||| |||||||||||||||||| |||||  |  || | | ||| |
Sbjct: 476 tgtactggggaattgcagctgatggttctgttgtaatctctgatgatctgcaagtcatca 535

                                                                      
Query: 263 aaggaagctgtgcaaagtcatttgcaccatttccaaaagggtgcatgttccatagtgaa 321
           ||| | | |||||||| |||||||| || ||||||  ||| | ||||||||||||||||
Sbjct: 536 aagcaggatgtgcaaaatcatttgcgccttttccagcaggattcatgttccatagtgaa 594