Jatropha Genome Database

JcCD0102044.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCD0102044.10 - phase: 2 /pseudo/partial
         (269 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

27623.m000137 cop9 complex subunit 7a, putative                       117   3e-26

>27623.m000137 cop9 complex subunit 7a, putative
          Length = 1239

 Score =  117 bits (59), Expect = 3e-26
 Identities = 120/139 (86%), Gaps = 1/139 (0%)
 Strand = Plus / Plus

                                                                       
Query: 92  aggttgcagagcaacaagttactaggctttgtgaggaggcacaggaatgtatggtggtgg 151
           ||||||| ||||||||||||| |||||| |||| ||| ||||| ||||| |||||| | |
Sbjct: 92  aggttgccgagcaacaagttagtaggctatgtgtggaagcacaagaatgcatggtgatag 151

                                                                       
Query: 152 gcagatggctggacctggcatctttaatgctcacttctgctgattttgatattttccaac 211
           |||||||| ||||  |||| |||||||| ||||||||||||||| || ||||| ||||| 
Sbjct: 152 gcagatggttggatttggcttctttaatactcacttctgctgatgtt-atattctccaat 210

                              
Query: 212 tctaaggtctcagagaaag 230
           || ||||||||||||||||
Sbjct: 211 tccaaggtctcagagaaag 229