Jatropha Genome Database

JcCD0101804.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCD0101804.10 + phase: 0 /pseudo
         (365 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29751.m001805 proliferating cell nuclear antigen, putative            133   8e-31

>29751.m001805 proliferating cell nuclear antigen, putative
          Length = 801

 Score =  133 bits (67), Expect = 8e-31
 Identities = 256/319 (80%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgttggagctaaggctcgtgcaaggttcccttctcaagaaggtgctagatgcgatcaag 60
           ||||||||||||||| | |||||||| ||  | || ||||||||  ||||| | ||||||
Sbjct: 1   atgttggagctaaggttggtgcaaggatcattgctaaagaaggttttagattcaatcaag 60

                                                                       
Query: 61  gaattggttaaagatgccaacttcgattgctcgacgactggcttctctctccaggccatg 120
           || || || || |||||||||||||| || ||  |||| || ||||| || ||||| |||
Sbjct: 61  gacttagtgaacgatgccaacttcgactgttcatcgacgggattctcccttcaggcaatg 120

                                                                       
Query: 121 gattccagccatgtcgctttggtgtctcttctccttagagcggagggctttgagcactat 180
           ||||| ||||| || ||  | ||| | || || || ||| ||||||| |||||||| |||
Sbjct: 121 gattcgagccacgtggcacttgtggcactgcttctaagatcggagggttttgagcattat 180

                                                                       
Query: 181 cgctgtgaccgtaacctttccatgggtatgaatcttgataacatggctaagatgttaaag 240
           || |||||||||||  | || ||||| ||||||||  |||| ||| |||| ||||| | |
Sbjct: 181 cgatgtgaccgtaatatctcaatggggatgaatctgaataatatgtctaaaatgttgagg 240

                                                                       
Query: 241 tgctccggaaatgatgatatcatcaccatcaaggctgacgacggcagcgactctgtcact 300
           ||||| || || || || |||||||| ||||| |||||||| ||||| ||  | ||||||
Sbjct: 241 tgctctggtaacgacgacatcatcactatcaaagctgacgatggcagtgataccgtcact 300

                              
Query: 301 ttcatgtttgaaagtccca 319
           |||||||||||||||||||
Sbjct: 301 ttcatgtttgaaagtccca 319