Jatropha Genome Database

JcCD0070253.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCD0070253.10 - phase: 1 /pseudo/partial
         (573 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28565.m000327 Programmed cell death 6-interacting protein, putative   550   e-156

>28565.m000327 Programmed cell death 6-interacting protein, putative
          Length = 2052

 Score =  550 bits (277), Expect = e-156
 Identities = 489/557 (87%), Gaps = 2/557 (0%)
 Strand = Plus / Plus

                                                                       
Query: 11  cttgttatcggtatggtttagagctgcatgagaaagaagaagtggcggaagaaattgcac 70
           |||||||||| ||| |||||||||||||||||||||||||| | || |||||||||||| 
Sbjct: 221 cttgttatcgttatagtttagagctgcatgagaaagaagaaatagctgaagaaattgcaa 280

                                                                       
Query: 71  ggttaaagagtgcggtcagtgccttatctgaggrcaaagaaaagctctaagggggctgca 130
           |||| | ||||| ||| ||||||||| |||||| | ||||||| ||| ||||||||||| 
Sbjct: 281 ggttgaggagtggggttagtgccttagctgagg-cgaagaaaaactcaaagggggctgct 339

                                                                       
Query: 131 gcacagcttctagaagcaattagcaagcttgaatccaatatcaatcgcaatttggatagg 190
           | ||||||||| || || |||||||||||||||  |||||||||||||||  |||| |||
Sbjct: 340 gtacagcttctggatgctattagcaagcttgaagtcaatatcaatcgcaacctggagagg 399

                                                                       
Query: 191 gctgtgaaaggaaaatgatagggtgtacctcatgagggttccttctccaagttccttgcc 250
           || ||||| |||||||||||| || |||||||||||| ||||||| || | ||| || ||
Sbjct: 400 gccgtgaa-ggaaaatgatagagtttacctcatgaggattccttcccctacttcattacc 458

                                                                       
Query: 251 tcctcttccagcattttctatggtaaagccgatggcaatgaatgaggtattagatgcaag 310
           |||||||||||||||||| |||||||| || ||| |||||||||| ||| | ||||||||
Sbjct: 459 tcctcttccagcattttcaatggtaaaaccaatgtcaatgaatgaagtactcgatgcaag 518

                                                                       
Query: 311 caaggaaaagatgttcgcaagtcttgttccagacagtagtgcaaaagctctttcaaggta 370
           ||||||||||||||| |||| ||||||||||||||| ||||||||||||||||| |||||
Sbjct: 519 caaggaaaagatgtttgcaactcttgttccagacagcagtgcaaaagctctttccaggta 578

                                                                       
Query: 371 tactgagatggttgatgaagttataaggacacaagctgagaaattacagcaagccagtga 430
           |||||| |||||||||||  |||| ||   ||||||||||||||||||||||| ||||||
Sbjct: 579 tactgaaatggttgatgagattatcagagtacaagctgagaaattacagcaaggcagtga 638

                                                                       
Query: 431 gctaactcgagtgaggctcaaggaaatggacctgccagaatcaattcttgctttggaagg 490
           ||||||| |||| |||||||||||||||||||||||||| || ||||||||||| |||||
Sbjct: 639 gctaactagagtcaggctcaaggaaatggacctgccagattccattcttgctttagaagg 698

                                                                       
Query: 491 aaattttacgcttccagcagatcttaaggaagatgtggaggcagtgcagattagtggggg 550
           ||||||||| |||||| |||||||||| ||||||||||| |||||||| |||||||| ||
Sbjct: 699 aaattttactcttccaacagatcttaaagaagatgtggaagcagtgcaaattagtggtgg 758

                            
Query: 551 accagctggcctggaag 567
            || |||||| ||||||
Sbjct: 759 ccctgctggcttggaag 775