Jatropha Genome Database

JcCD0068965.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCD0068965.10 - phase: 1 /partial
         (374 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30078.m002329 Auxin response factor, putative                         240   5e-63

>30078.m002329 Auxin response factor, putative
          Length = 2109

 Score =  240 bits (121), Expect = 5e-63
 Identities = 304/365 (83%)
 Strand = Plus / Plus

                                                                        
Query: 9    aatttttcggatggctctgggtctgcttttcatcaacaaggcctattagagcgctcatca 68
            |||||||| ||||||||||| || ||  |||||||||||||||||   || | ||| || 
Sbjct: 1729 aatttttctgatggctctggatcagcgcttcatcaacaaggcctacctgaacactcgtcc 1788

                                                                        
Query: 69   tgcgaaggtttccaatggtataaggacaatcgccaagaaaatgagatgtctttggagact 128
            |  ||||||||||||||||  ||||  ||||||||||| |  ||    || |||||||||
Sbjct: 1789 tatgaaggtttccaatggtgcaagggtaatcgccaagagaccgaaccctccttggagact 1848

                                                                        
Query: 129  ggtatctgcaaagtcttcatggaatcagaggatgtcggtcgcacgcttgacctttcgttg 188
            |||   ||||||||||||||||||||||||||||| || || || ||||||||||| |||
Sbjct: 1849 ggtcattgcaaagtcttcatggaatcagaggatgtgggccgaactcttgacctttcattg 1908

                                                                        
Query: 189  ctaaggtcttatgaggaactgtaccgaaaacttgcagatatgtttggtattgaaaattct 248
            ||  | |||||||| ||| ||||| ||||||| |||||||||||||| || ||||| || 
Sbjct: 1909 ctcggatcttatgatgaattgtacagaaaactcgcagatatgtttggaatagaaaactcc 1968

                                                                        
Query: 249  gagacattgaacaatgtgctttaccgtgacattactggctctgtcaagcacattggggat 308
            |||||| | |||||||| ||||||||||| ||  |||||  |||||| ||||| ||||| 
Sbjct: 1969 gagacacttaacaatgttctttaccgtgatatcgctggcattgtcaaacacataggggac 2028

                                                                        
Query: 309  gaaccattcagtgacttcatgaaaacagcaagaagattgacaattctaatggattcaagc 368
            ||||||||||||||||||||||| ||||| || |||||||||||  ||||||||||||||
Sbjct: 2029 gaaccattcagtgacttcatgaagacagctaggagattgacaatcataatggattcaagc 2088

                 
Query: 369  agtga 373
            |||||
Sbjct: 2089 agtga 2093