Jatropha Genome Database

JcCD0056747.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCD0056747.10 + phase: 0 /pseudo/partial
         (233 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28637.m000206 Diaminopimelate epimerase, putative                     143   5e-34

>28637.m000206 Diaminopimelate epimerase, putative
          Length = 1110

 Score =  143 bits (72), Expect = 5e-34
 Identities = 193/233 (82%), Gaps = 9/233 (3%)
 Strand = Plus / Plus

                                                                        
Query: 1    tttgtgcaagtttactctcattcacacctgaaaatgtgcgtctgggagcgcgggggcgt- 59
            |||||||||||| |||||||||||||||| |||||| | || |||||||| ||||  |  
Sbjct: 862  tttgtgcaagttcactctcattcacacctcaaaatgcgtgtgtgggagcgtggggcagga 921

                                                                        
Query: 60   gcaaccctagcctgtggaacgggcgcttgtgcaacagtagttgctgctgtccttgaaggt 119
            |||||  | ||||||||||| || || ||||||||||||||||||||||| ||||| |||
Sbjct: 922  gcaacattggcctgtggaactggggcctgtgcaacagtagttgctgctgttcttgagggt 981

                                                                        
Query: 120  cgtgctgggagga--------gttgacctaccaggagggccattagagattgagtggagg 171
            |||||||| ||||        ||||| ||||| ||||| |||||||||||||| |||| |
Sbjct: 982  cgtgctggcaggaactgcacagttgatctacccggaggaccattagagattgaatggaag 1041

                                                                 
Query: 172  gaagaaaacaaccatgtatatatgactggccctgcggaagtagtgttctatgg 224
            || ||| | ||||||||||||||||| ||||| || |||| |||||| |||||
Sbjct: 1042 gaggaagataaccatgtatatatgacaggcccagctgaagcagtgttttatgg 1094