Jatropha Genome Database
- JcCD0055831.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCD0055831.10 + phase: 0 /partial
(263 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
30005.m001300 chlorophyll A/B binding protein, putative 349 5e-96
29693.m002051 chlorophyll A/B binding protein, putative 333 3e-91
30076.m004578 chlorophyll A/B binding protein, putative 113 5e-25
29597.m000282 chlorophyll A/B binding protein, putative 72 2e-12
>30005.m001300 chlorophyll A/B binding protein, putative
Length = 798
Score = 349 bits (176), Expect = 5e-96
Identities = 239/260 (91%)
Strand = Plus / Plus
Query: 1 atggctacctctacaatggctctctcctccccttcattagccggcaaggcggtgaagctc 60
|||||||||||||||||||| ||||||||||||||||| || |||||||| |||||||||
Sbjct: 1 atggctacctctacaatggccctctcctccccttcattcgctggcaaggctgtgaagctc 60
Query: 61 ggcccctctgcccctgagctcatgggcaacggccgtgttacaatgaggaaaaccgcctcc 120
||| ||||||||||||||||||||||| |||||||| ||||||||||||||||| ||
Sbjct: 61 tccccttctgcccctgagctcatgggcaatggccgtgtctcaatgaggaaaaccgccgcc 120
Query: 121 aagaatgtttcctctggcagcccatggtacggcccagaccgtgttaagtacttgggacca 180
|||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 121 aagaatgtttcctccggaagcccatggtacggcccagaccgtgttaagtacttgggtcca 180
Query: 181 ttctctggtgagcccccatcctacttgaccggtgagttccctggtgactatggctgggac 240
||||| ||||||||||||||||||||||| ||||| ||||| |||||||| || ||||||
Sbjct: 181 ttctccggtgagcccccatcctacttgactggtgaattccccggtgactacggatgggac 240
Query: 241 actgctgggctttctgctga 260
||||||||||| ||||||||
Sbjct: 241 actgctgggctctctgctga 260
>29693.m002051 chlorophyll A/B binding protein, putative
Length = 798
Score = 333 bits (168), Expect = 3e-91
Identities = 237/260 (91%)
Strand = Plus / Plus
Query: 1 atggctacctctacaatggctctctcctccccttcattagccggcaaggcggtgaagctc 60
|||||||||||||||||||| ||||||||||| ||||| || || |||||||||||||||
Sbjct: 1 atggctacctctacaatggccctctcctccccctcattcgctggaaaggcggtgaagctc 60
Query: 61 ggcccctctgcccctgagctcatgggcaacggccgtgttacaatgaggaaaaccgcctcc 120
||| || |||||||||||||||||||| ||||||||| ||||||||||||| ||| ||
Sbjct: 61 tccccttccgcccctgagctcatgggcaatggccgtgtttcaatgaggaaaactgccgcc 120
Query: 121 aagaatgtttcctctggcagcccatggtacggcccagaccgtgttaagtacttgggacca 180
|||| || ||||| || ||||||||||| |||||||||||||||||||||||||| |||
Sbjct: 121 aagagcgtctcctccggaagcccatggtatggcccagaccgtgttaagtacttgggtcca 180
Query: 181 ttctctggtgagcccccatcctacttgaccggtgagttccctggtgactatggctgggac 240
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 181 ttctctggtgagcccccatcctacttgaccggtgagttccccggtgactacggctgggac 240
Query: 241 actgctgggctttctgctga 260
||||||||||| ||||||||
Sbjct: 241 actgctgggctctctgctga 260
>30076.m004578 chlorophyll A/B binding protein, putative
Length = 804
Score = 113 bits (57), Expect = 5e-25
Identities = 102/117 (87%)
Strand = Plus / Plus
Query: 129 ttcctctggcagcccatggtacggcccagaccgtgttaagtacttgggaccattctctgg 188
||||||||| ||||| ||||| || || |||||||| |||||| | || |||||||| ||
Sbjct: 135 ttcctctgggagcccctggtatggacctgaccgtgtcaagtacctcggtccattctccgg 194
Query: 189 tgagcccccatcctacttgaccggtgagttccctggtgactatggctgggacactgc 245
|||||||||||| |||||||| ||||| ||||||||||| ||||| |||||||||||
Sbjct: 195 tgagcccccatcttacttgacaggtgaattccctggtgattatggttgggacactgc 251
>29597.m000282 chlorophyll A/B binding protein, putative
Length = 798
Score = 71.9 bits (36), Expect = 2e-12
Identities = 87/104 (83%)
Strand = Plus / Plus
Query: 145 tggtacggcccagaccgtgttaagtacttgggaccattctctggtgagcccccatcctac 204
||||| ||||||||||| |||||||||||||||||||||| | | ||||| |||
Sbjct: 145 tggtatggcccagaccgcccaaagtacttgggaccattctctgagcaaactccatcatac 204
Query: 205 ttgaccggtgagttccctggtgactatggctgggacactgctgg 248
|||| ||||| ||||||||||||||||| ||||| ||||||||
Sbjct: 205 ctgacgggtgaattccctggtgactatggttgggatactgctgg 248