Jatropha Genome Database

JcCD0054966.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCD0054966.10 - phase: 0 
         (291 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29794.m003359 conserved hypothetical protein                          266   7e-71
30146.m003441 hypothetical protein                                    101   2e-21

>29794.m003359 conserved hypothetical protein
          Length = 2163

 Score =  266 bits (134), Expect = 7e-71
 Identities = 199/220 (90%), Gaps = 3/220 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaagagaggaaaggatgatgaaaagataatggggcctatgttccctaggcttcatgtg 60
           ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 13  atgaagagagggaaggatgatgaaaagatgatggggcctatgttccctaggcttcatgtg 72

                                                                       
Query: 61  aatgacacggagaaaggagggccaagagctcctccaaggaacaagatggccctttatgag 120
           ||||| || || |||||||||||||||||||| || ||||| |||||||||||||| |||
Sbjct: 73  aatgatacagataaaggagggccaagagctccaccgaggaataagatggccctttacgag 132

                                                                       
Query: 121 cagcttagtattccttctcagaggtt---taatcatgctgttttgcctcttaacccaagt 177
           ||||||||||||||||||||||||||   ||||||||  | ||||| || ||| ||||||
Sbjct: 133 cagcttagtattccttctcagaggtttaataatcatggcgctttgcttcataatccaagt 192

                                                   
Query: 178 aaagctagcaacttgattcctgcagcatcctcaagccagg 217
           ||||||| ||||||| |||||||||||||||| |||||||
Sbjct: 193 aaagctaccaacttggttcctgcagcatcctccagccagg 232


>30146.m003441 hypothetical protein
          Length = 2352

 Score =  101 bits (51), Expect = 2e-21
 Identities = 75/83 (90%)
 Strand = Plus / Plus

                                                                       
Query: 37  cctatgttccctaggcttcatgtgaatgacacggagaaaggagggccaagagctcctcca 96
           |||||||| |||||||||||||| ||||| || ||||||||||||||||| || ||||||
Sbjct: 40  cctatgtttcctaggcttcatgtcaatgatacagagaaaggagggccaagggcacctcca 99

                                  
Query: 97  aggaacaagatggccctttatga 119
           || ||||||||||| ||||||||
Sbjct: 100 agaaacaagatggctctttatga 122