Jatropha Genome Database

JcCD0053272.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCD0053272.10 + phase: 0 /pseudo/partial
         (531 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30072.m000942 replication factor C / DNA polymerase III gamma-ta...   454   e-127

>30072.m000942 replication factor C / DNA polymerase III gamma-tau
           subunit, putative
          Length = 1029

 Score =  454 bits (229), Expect = e-127
 Identities = 346/385 (89%)
 Strand = Plus / Plus

                                                                       
Query: 52  cagattgtcaaggtattggagttaattggaaagaaagaagggctgcagcttccacctgga 111
           |||||||| |||||||| ||||| ||||| ||||||||||| ||||| ||||||| ||||
Sbjct: 580 cagattgttaaggtattagagttcattggtaagaaagaaggcctgcaacttccacatgga 639

                                                                       
Query: 112 tttgctgcccgtatagccgaaaaatcaaatcgaagtttaaggagggctatactttcattt 171
           |||||||| ||| |||| |||||||||||||||||||||||||| ||  ||||||| |||
Sbjct: 640 tttgctgctcgtgtagctgaaaaatcaaatcgaagtttaaggagagccgtactttctttt 699

                                                                       
Query: 172 gagacttgtcgcgtccaacagtatccttttacaagtaatcaagcaatacctccaatggac 231
           |||||||| || ||||||||||||||||| |||||||||||  |||||||||||||||| 
Sbjct: 700 gagacttgccgagtccaacagtatcctttcacaagtaatcagccaatacctccaatggat 759

                                                                       
Query: 232 tgggaggaatatgtttctgaaatagctactgatataatgagggagcagagtcctaaaaag 291
           ||||||||||||||||||||||||||  |||| |||||||| ||||||||||||||||||
Sbjct: 760 tgggaggaatatgtttctgaaatagcatctgacataatgagagagcagagtcctaaaaag 819

                                                                       
Query: 292 ctttttcaggttcgagggaaattgtacgaactgctaattaattgtattcctccagagatt 351
           ||||||||||| |||||||| ||||| ||||| || ||||||||||||||||| || |||
Sbjct: 820 ctttttcaggtccgagggaagttgtatgaactacttattaattgtattcctcctgatatt 879

                                                                       
Query: 352 attttgaagaggctgctttacgaattattgaagaaattggatgaggaattaaagcatgag 411
           ||| ||||||||||| |  | |||||||||||||||||||||||||||||||||||||||
Sbjct: 880 attctgaagaggctggtcaatgaattattgaagaaattggatgaggaattaaagcatgag 939

                                    
Query: 412 ctctcccattgggcagcttattatg 436
            ||||||||||||| || |||||||
Sbjct: 940 gtctcccattgggctgcatattatg 964