Jatropha Genome Database

JcCD0051435.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCD0051435.10 - phase: 2 /pseudo/partial
         (656 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30131.m007228 conserved hypothetical protein                          359   1e-98

>30131.m007228 conserved hypothetical protein
          Length = 4479

 Score =  359 bits (181), Expect = 1e-98
 Identities = 297/332 (89%), Gaps = 4/332 (1%)
 Strand = Plus / Plus

                                                                        
Query: 35   aagatccctggtctgaaagagtttgattttcttatttgaagttcattggtctcattcttt 94
            ||||||| ||||||||||||||| |||||||||||| |||||  | ||||||| ||||||
Sbjct: 1328 aagatccttggtctgaaagagtt-gattttcttatt-gaagt--aatggtctccttcttt 1383

                                                                        
Query: 95   gaaaaacaacagtctcaaaaggaagctataaatgcacttccactttatccaaatgagcaa 154
            ||||| || |||||||||||||||||||| ||||| || |||||||||||||||||||| 
Sbjct: 1384 gaaaagcagcagtctcaaaaggaagctatcaatgctctaccactttatccaaatgagcag 1443

                                                                        
Query: 155  atcatgtgggatgaaagccttgtaccaagcatcaattactccggagaaggttgtctggca 214
            || ||||||||||| ||||| ||||||||||| ||||| ||||| |||||||||||||||
Sbjct: 1444 ataatgtgggatgagagcctggtaccaagcattaattattccggtgaaggttgtctggca 1503

                                                                        
Query: 215  cttccaaaacttaatttgcaatttctaacactccatgattatcttctacgaaacttcaat 274
            ||||| ||||| ||| |||||||| ||||||||||||||||||||||  |||||||||||
Sbjct: 1504 cttccgaaactcaatctgcaatttttaacactccatgattatcttctgagaaacttcaat 1563

                                                                        
Query: 275  ctctttcggcttgaatcaacatatgagattcgtgaggatattcaagaagctgttccacat 334
            |||||||||||||||||||  |||||||| |||||||||||||| ||||||||||| || 
Sbjct: 1564 ctctttcggcttgaatcaatgtatgagatccgtgaggatattcaggaagctgttccgcac 1623

                                            
Query: 335  ctccttgcctatataaataatgaaggagaaac 366
            || ||||| ||| | |||||||||||||||||
Sbjct: 1624 cttcttgcttatgttaataatgaaggagaaac 1655



 Score =  192 bits (97), Expect = 2e-48
 Identities = 145/161 (90%)
 Strand = Plus / Plus

                                                                        
Query: 496  ttataaatcacaaataagatcagagtggaatgcccttaaggagcatgatgtgttgttttt 555
            ||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||| |
Sbjct: 1659 ttataaagcacaaataagatcagagtggaatgcccttaaggagcatgatgttttatttct 1718

                                                                        
Query: 556  actctcaatacgaccttcgtttgagcctcttagtgctgaagaagctggaaaggccactgt 615
            ||||||||| || ||||| ||||||||||||||||| || ||||| |||||||| |||||
Sbjct: 1719 actctcaattcgtccttcatttgagcctcttagtgccgaggaagcaggaaaggctactgt 1778

                                                     
Query: 616  gccgcagaggcttggtctccagtatgtacgggggtgtgaaa 656
             || |||||||||||||| ||||| |||||||| |||||||
Sbjct: 1779 acctcagaggcttggtcttcagtacgtacggggatgtgaaa 1819