Jatropha Genome Database

JcCB1003421.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB1003421.10 - phase: 0 /pseudo/partial
         (346 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29696.m000106 actin binding protein, putative                         254   3e-67
29848.m004543 DNA binding protein, putative                            60   9e-09

>29696.m000106 actin binding protein, putative
          Length = 3576

 Score =  254 bits (128), Expect = 3e-67
 Identities = 182/200 (91%)
 Strand = Plus / Plus

                                                                        
Query: 1    atgcaagttcccagagtagaatctaagctcagagtcttctcatttaagatgcagtttcat 60
            |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2782 atgcaagtaccaagagtagaatctaagctcagagtcttctcatttaagatgcagtttcat 2841

                                                                        
Query: 61   tcccaggtttctgaccttagaaagagcctgaatgtggtgaactctaccgcagaagagatc 120
            || ||||||||||| |||||||| |||||||||||||||||||| || ||||||||||| 
Sbjct: 2842 tctcaggtttctgatcttagaaaaagcctgaatgtggtgaactccacagcagaagagatt 2901

                                                                        
Query: 121  aggaattctgccaaactgaaaagaatcatgcagactattctttcactaggaaatgcttta 180
            ||||||||||| ||| |||||| | |||||||||| ||||| || |||||||||||| | 
Sbjct: 2902 aggaattctgcgaaattgaaaaaagtcatgcagacaattctgtctctaggaaatgctctg 2961

                                
Query: 181  aaccagggaactgctagggg 200
            |||||||||||||| |||||
Sbjct: 2962 aaccagggaactgccagggg 2981


>29848.m004543 DNA binding protein, putative
          Length = 3801

 Score = 60.0 bits (30), Expect = 9e-09
 Identities = 51/58 (87%)
 Strand = Plus / Plus

                                                                      
Query: 137  tgaaaagaatcatgcagactattctttcactaggaaatgctttaaaccagggaactgc 194
            ||||||| |||||||| ||||||||||| || || |||||||| ||||| ||||||||
Sbjct: 3131 tgaaaaggatcatgcaaactattctttccctgggtaatgctttgaaccatggaactgc 3188