Jatropha Genome Database

JcCB0968951.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0968951.10 - phase: 0 
         (753 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m013751 zinc finger protein, putative                           117   1e-25
28152.m000908 zinc finger protein, putative                            56   3e-07

>30170.m013751 zinc finger protein, putative
          Length = 771

 Score =  117 bits (59), Expect = 1e-25
 Identities = 159/191 (83%), Gaps = 6/191 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggcactggatgctctcaactctccaactacagcaactccatccttccaatttgaggat 60
           |||||||| || ||||| ||||||||||| |||||||||||| | ||||| ||||| |||
Sbjct: 1   atggcactagaagctctaaactctccaacaacagcaactccaactttccagtttgaagat 60

                                                                       
Query: 61  tccagtggtcttcatagctacttggctgagccatggaccaagcgcaagcgatctaagcgt 120
           || ||  |||||||   || | | || ||||||||||| || |||||||| || ||||||
Sbjct: 61  tcgagcagtcttca---ctgccttgcagagccatggactaaacgcaagcgttccaagcgt 117

                                                                       
Query: 121 tc---tcaccaccaacccactgaggaagagtatctagctctttgccttgttatgcttgct 177
           ||   |||||||||||| ||||| ||||| ||||| |||||||||||||| |||||||||
Sbjct: 118 tcacatcaccaccaacctactgaagaagaatatctcgctctttgccttgtcatgcttgct 177

                      
Query: 178 cgtggtaccac 188
           || || |||||
Sbjct: 178 cgcggaaccac 188



 Score =  113 bits (57), Expect = 2e-24
 Identities = 102/117 (87%)
 Strand = Plus / Plus

                                                                       
Query: 610 cagagccaacgtgaatttgaccttaacctcccagccttgccggaatttgcagcggatttc 669
           ||||| |||||||  |||||||||||  |||| ||||||||||| || ||||| ||||||
Sbjct: 619 cagagtcaacgtggctttgaccttaatatccctgccttgccggagttcgcagctgatttc 678

                                                                    
Query: 670 tttatctccggtgacgatgaagttatgagcccactgccggtgaaaaagccccgtctt 726
            |||| |||||||||||||| ||||||||||| || |||||||||||||| ||||||
Sbjct: 679 cttatttccggtgacgatgaggttatgagccctctaccggtgaaaaagccgcgtctt 735


>28152.m000908 zinc finger protein, putative
          Length = 759

 Score = 56.0 bits (28), Expect = 3e-07
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                       
Query: 136 actgaggaagagtatctagctctttgccttgttatgcttgctcg 179
           ||||| ||||||||||| |||||||||||| | |||||||||||
Sbjct: 112 actgaagaagagtatctcgctctttgccttatcatgcttgctcg 155