Jatropha Genome Database

JcCB0940751.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0940751.10 + phase: 0 /pseudo/partial
         (742 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29630.m000832 ubiquitin-protein ligase, putative                       80   2e-14

>29630.m000832 ubiquitin-protein ligase, putative
          Length = 1245

 Score = 79.8 bits (40), Expect = 2e-14
 Identities = 64/72 (88%)
 Strand = Plus / Plus

                                                                       
Query: 526 atgtcttacatgcttggtattgatcagaagatgggtgtgcttgtgggcgatgctttgcat 585
           ||||||| |||  ||||| ||||||||||||||||||||||||| || || |||||||||
Sbjct: 583 atgtcttgcattattggttttgatcagaagatgggtgtgcttgttggtgaagctttgcat 642

                       
Query: 586 tggctagtgagt 597
           ||||||| ||||
Sbjct: 643 tggctagcgagt 654



 Score = 73.8 bits (37), Expect = 1e-12
 Identities = 76/89 (85%)
 Strand = Plus / Plus

                                                                       
Query: 240 ggttcctgtaatgggttgatatgctttggggatgctgttggaaggattgttttgatgaac 299
           ||||| |||||||||||| ||||||||||  |||||  |||||| |||  ||| ||||||
Sbjct: 298 ggttcttgtaatgggttgttatgctttggtaatgctagtggaagaattactttaatgaac 357

                                        
Query: 300 ccagtaactagaaagcatcaagttttgcc 328
           |||  ||||||||||||| ||||||||||
Sbjct: 358 ccatcaactagaaagcataaagttttgcc 386