Jatropha Genome Database

JcCB0907471.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0907471.10 - phase: 2 /partial
         (256 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30068.m002596 Ubiquitin carboxyl-terminal hydrolase, putative         127   3e-29

>30068.m002596 Ubiquitin carboxyl-terminal hydrolase, putative
          Length = 2817

 Score =  127 bits (64), Expect = 3e-29
 Identities = 172/208 (82%)
 Strand = Plus / Plus

                                                                       
Query: 49  cttggttgatgggcagtctcctgattctcaagattttcatgttgctccttcaggaatggc 108
           |||||||||||||||| |  ||||||||||| || ||||||||| ||| |      ||||
Sbjct: 204 cttggttgatgggcagccgtctgattctcaacatcttcatgttgttcccttgactgtggc 263

                                                                       
Query: 109 tgatagacctggtcctataaacaactccgaaatagttgaaaatggaagtggtggtgagag 168
           ||||||||||||||| ||  | || || ||  ||||| ||||||||||   |  ||||  
Sbjct: 264 tgatagacctggtccaattgataattctgatctagttcaaaatggaagcaatattgaggc 323

                                                                       
Query: 169 tgatgatctagagcttgctagaacattgctggaaggtagggactatgttttggttcccca 228
           |||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||| ||
Sbjct: 324 tgatgatctagagctttctagaacattgttggaagggagggactatgttttggttcctca 383

                                       
Query: 229 aaaagtttgggaaaagcttgtacaatgg 256
            ||||||||||| |||||||| ||||||
Sbjct: 384 gaaagtttgggataagcttgtgcaatgg 411