Jatropha Genome Database

JcCB0897851.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0897851.10 + phase: 0 /pseudo/partial
         (353 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29889.m003377 neurobeachin, putative                                  165   2e-40

>29889.m003377 neurobeachin, putative
          Length = 4728

 Score =  165 bits (83), Expect = 2e-40
 Identities = 158/183 (86%)
 Strand = Plus / Plus

                                                                        
Query: 1    atgaataagccagagcctgtgcaaagttggagtgctttagccctcattgattgtctgagc 60
            ||||| ||||| ||||| || || ||||||||||||||||| || ||||||||  | |||
Sbjct: 3043 atgaacaagcccgagccggttcagagttggagtgctttagcactgattgattgcttaagc 3102

                                                                        
Query: 61   acattagatggtctagtttcattcttgccaagggagatggttgtaaaggagctgattgaa 120
            || ||||||||||||||| ||||||||||||| ||| |||||| |||||| |||||||||
Sbjct: 3103 acgttagatggtctagttgcattcttgccaagcgaggtggttgcaaaggaactgattgaa 3162

                                                                        
Query: 121  ggaaaaagctgtttacatgttgcggttctgatgcagacgaacttggaaattccagtgctt 180
            |  |  || |||||||||||| | ||||| |||||||| |||||||||||||||||||||
Sbjct: 3163 gataggagttgtttacatgttactgttcttatgcagaccaacttggaaattccagtgctt 3222

               
Query: 181  cag 183
            |||
Sbjct: 3223 cag 3225



 Score =  121 bits (61), Expect = 3e-27
 Identities = 85/93 (91%)
 Strand = Plus / Plus

                                                                        
Query: 180  tcagtttgtcagcgaattggaccagaattaacagctttacatgtcctaccacaactcaaa 239
            ||||||||||||| ||||||||||||||||||||| | |||||| || || |||||||||
Sbjct: 3247 tcagtttgtcagcaaattggaccagaattaacagcatcacatgttctgccgcaactcaaa 3306

                                             
Query: 240  gaactatttgatgagcttgcgttctcacaggaa 272
            || ||||||||||||||||| ||||||||||||
Sbjct: 3307 gagctatttgatgagcttgctttctcacaggaa 3339