Jatropha Genome Database

JcCB0894111.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0894111.10 - phase: 2 /partial
         (702 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29646.m001073 nucleic acid binding protein, putative                  268   4e-71
30170.m014220 nucleic acid binding protein, putative                   56   3e-07

>29646.m001073 nucleic acid binding protein, putative
          Length = 1563

 Score =  268 bits (135), Expect = 4e-71
 Identities = 266/309 (86%), Gaps = 3/309 (0%)
 Strand = Plus / Plus

                                                                        
Query: 376  tgtctttgctagtttatttgcttcatcaactgcgtctggaagcatacagcctcctcaaac 435
            ||||||||||||| |||||||||| |||||||| ||||||||| ||||||| ||||||||
Sbjct: 909  tgtctttgctagtctatttgcttcctcaactgcatctggaagcctacagccacctcaaac 968

                                                                        
Query: 436  tcctgcatttactgacctaattcgagctatggctcaccctgatcgtccagccgaccttgc 495
            |||||| ||||||||||||||||| || ||| ||| |||||| || ||| | || ||  |
Sbjct: 969  tcctgcctttactgacctaattcgggccatgtctcgccctgaacgcccaacagatctgcc 1028

                                                                        
Query: 496  tccaccatcatctactgaacccatttctctctgtctctccaccagtcatggatcatcaat 555
            ||||   || |  | |||||| |||||||||||||| || |||| |||||| || |||||
Sbjct: 1029 tcca---tcctgcaatgaaccaatttctctctgtctttctaccactcatgggtcgtcaat 1085

                                                                        
Query: 556  atttggtactgcagggcaagagcgcaggcaatatgcgcctccacctcaaccagcaatgtc 615
            ||||||||||| ||| |||||||| || |||||||| ||||||| |||||||||||||||
Sbjct: 1086 atttggtactggaggacaagagcgtagtcaatatgcacctccacgtcaaccagcaatgtc 1145

                                                                        
Query: 616  tgccactgcactattacaaaaagcagcccaaataggagccgctgctacaaatgcatcatt 675
            ||||||||||||||| ||||||||||| ||||| ||  | ||||||||||||||||||||
Sbjct: 1146 tgccactgcactattgcaaaaagcagctcaaatggggcctgctgctacaaatgcatcatt 1205

                     
Query: 676  acttcgtgg 684
             ||||||||
Sbjct: 1206 gcttcgtgg 1214



 Score = 95.6 bits (48), Expect = 3e-19
 Identities = 78/88 (88%)
 Strand = Plus / Plus

                                                                       
Query: 195 ctcagtcagctggtgtaatatcttcctctatttcgcctaatcatagtccagagttgccag 254
           |||||||||||| |||||||||||| ||  |||| || | ||||||||||||||||||||
Sbjct: 722 ctcagtcagctgctgtaatatcttcttcagtttcaccaattcatagtccagagttgccag 781

                                       
Query: 255 ataatccctctccaattatagaagaagc 282
            ||||||| |||||||| ||||||||||
Sbjct: 782 gtaatcccactccaattgtagaagaagc 809



 Score = 75.8 bits (38), Expect = 3e-13
 Identities = 47/50 (94%)
 Strand = Plus / Plus

                                                             
Query: 1   catcacacatagagccttttgtgatgctttagcggaggagagcgccagag 50
           |||||||||||||||||||||||||||||| || |||||||| |||||||
Sbjct: 501 catcacacatagagccttttgtgatgctttggcagaggagagtgccagag 550


>30170.m014220 nucleic acid binding protein, putative
          Length = 1509

 Score = 56.0 bits (28), Expect = 3e-07
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                       
Query: 8   catagagccttttgtgatgctttagcggaggagagcgccagagc 51
           ||||| || |||||||||||||| |||||||||||||| |||||
Sbjct: 562 catagggcgttttgtgatgctttggcggaggagagcgcgagagc 605