Jatropha Genome Database

JcCB0887231.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0887231.10 + phase: 0 /partial/short
         (119 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28206.m000104 DNA binding protein, putative                            96   5e-20

>28206.m000104 DNA binding protein, putative
          Length = 1125

 Score = 95.6 bits (48), Expect = 5e-20
 Identities = 104/122 (85%), Gaps = 3/122 (2%)
 Strand = Plus / Plus

                                                                        
Query: 1    cttcttcacctcagtctgagatttctttcttggatttctctga---ttcttcacaatggg 57
            ||||||||||||||||||| || || |||||||||||||||||    |||||||| ||||
Sbjct: 1001 cttcttcacctcagtctgaaatctcattcttggatttctctgactcctcttcacagtggg 1060

                                                                        
Query: 58   atgagactgagaatttcggtttggagaaatacccctcggtggagattgattgggcagctc 117
            | ||| ||||||| ||| | |||||||| ||||| || ||||||||||| |||||| |||
Sbjct: 1061 acgagtctgagaacttctgcttggagaagtacccttcagtggagattgactgggcatctc 1120

              
Query: 118  tt 119
            ||
Sbjct: 1121 tt 1122