Jatropha Genome Database

JcCB0850901.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0850901.10 - phase: 2 /partial
         (746 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30138.m003846 strictosidine synthase, putative                         60   2e-08

>30138.m003846 strictosidine synthase, putative
          Length = 1059

 Score = 60.0 bits (30), Expect = 2e-08
 Identities = 54/62 (87%)
 Strand = Plus / Plus

                                                                       
Query: 59  tgtgggagagcattaggcctcaaatttaatcctgcaacctgtgatctgtacattgcagat 118
           ||||||||| ||||||| || |||||| |||| ||||| |||||||||||| | ||||||
Sbjct: 355 tgtgggagaccattaggactgaaatttcatccagcaacttgtgatctgtacgtcgcagat 414

             
Query: 119 gc 120
           ||
Sbjct: 415 gc 416



 Score = 52.0 bits (26), Expect = 5e-06
 Identities = 74/90 (82%)
 Strand = Plus / Plus

                                                                       
Query: 306 cagacagaagtggaaggttattaaagtatgatccaaatagcaagaaagtgactgtgcttt 365
           ||||||| | ||||||||| || || ||||||| || || ||||||||||| ||| || |
Sbjct: 602 cagacaggactggaaggttgttgaaatatgatctaactaccaagaaagtgagtgtactgt 661

                                         
Query: 366 tcaaaggcttagcatttccaaatggggtgg 395
             |  ||||| |||||||||||||||||||
Sbjct: 662 ataggggcttggcatttccaaatggggtgg 691