Jatropha Genome Database

JcCB0836821.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0836821.10 + phase: 0 
         (348 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29269.m000246 protein translocase, putative                           305   9e-83

>29269.m000246 protein translocase, putative
          Length = 480

 Score =  305 bits (154), Expect = 9e-83
 Identities = 274/314 (87%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggatccatcggaaattaggtatttggaggatgatgatactcccataaagaaaacaatc 60
           |||||||| || ||| | ||||||||||||||  |||||||||||| || ||||||||||
Sbjct: 1   atggatccgtcagaattaaggtatttggaggacaatgatactcccacaatgaaaacaatc 60

                                                                       
Query: 61  aaaggtgctactatgggtttagttgctggaactatctgggggactgttgttgccacttgg 120
           |||||||||||||||||||||| |||||||||| ||||||| ||| ||||||||||||||
Sbjct: 61  aaaggtgctactatgggtttagctgctggaactctctggggaactattgttgccacttgg 120

                                                                       
Query: 121 tatgacgttcctcgtgttgagaaacatgttgcacttccagggctaataaggaccgtcaag 180
            |||| || ||||||||||||||||||||||||||||| || ||||||||||| ||||||
Sbjct: 121 catgatgtgcctcgtgttgagaaacatgttgcacttcctggcctaataaggactgtcaag 180

                                                                       
Query: 181 atgatgggtaactatggtgcaacttttgcagctattggaggagtttacattggagtcgag 240
           ||||||||||| |||||    |||||||| || |||||||||||||| ||||| || |||
Sbjct: 181 atgatgggtaattatgggttgacttttgctgccattggaggagtttatattggtgttgag 240

                                                                       
Query: 241 cagctggttcaacattacaggatgaagagagattttgtcaatggagctgttggtggcttt 300
           || ||| |||| || |  |||||||| || ||||||||||||||  ||||||||||||||
Sbjct: 241 caactgattcagcactttaggatgaaaagggattttgtcaatggtactgttggtggcttt 300

                         
Query: 301 gttgcaggggcttc 314
           || || ||||||||
Sbjct: 301 gtcgctggggcttc 314