Jatropha Genome Database

JcCB0824821.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0824821.10 - phase: 2 /partial
         (407 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29866.m000624 transcription initiation factor ia, putative            252   1e-66

>29866.m000624 transcription initiation factor ia, putative
          Length = 1923

 Score =  252 bits (127), Expect = 1e-66
 Identities = 298/355 (83%)
 Strand = Plus / Plus

                                                                        
Query: 53   aggctggtggattggtgtttggaatactgtaaaacccaagatggtcacatgaatccaaaa 112
            ||||||||||||||||||| ||| || |||| || |||||||||| ||||||| ||||||
Sbjct: 1231 aggctggtggattggtgttcggagtattgtagaaaccaagatggtgacatgaacccaaaa 1290

                                                                        
Query: 113  gcacatcgagttttctattctggatgtcaggccatcatgtatgtgctttgcttccgtatg 172
            |||||||||||||||||||||||||||||||||||  |||||||||| || || ||||||
Sbjct: 1291 gcacatcgagttttctattctggatgtcaggccatattgtatgtgctatgttttcgtatg 1350

                                                                        
Query: 173  aggtcgataatggatgttcctgggctcaaatcacatcttctcctcaaacctatggagctc 232
            || || || |||||| ||||  |||||||||| || |||||||  |  ||  ||||||  
Sbjct: 1351 agctcaatgatggatattccatggctcaaatcccaacttctccatatgcccttggagcaa 1410

                                                                        
Query: 233  atcttgaaacataaattagaccctttgaaggtttgcctgccatctatagtagaagagttt 292
            ||| |||| |||||||| |  ||| ||||||| |||||||||||||||||||||||||||
Sbjct: 1411 atcatgaagcataaattgggtcctctgaaggtgtgcctgccatctatagtagaagagttt 1470

                                                                        
Query: 293  ctcaaacaggcaaaagctgctcatttgttcaccacgcctgaaacattcatttctgaagat 352
            || ||||||||||||||||||||| |||| || ||  |  |||||| ||  | |||||||
Sbjct: 1471 ctaaaacaggcaaaagctgctcatctgtttactacatcccaaacatccagctttgaagat 1530

                                                                   
Query: 353  ttgctggaatctgaattttccagggagtttggggggcttgagagactggacatgt 407
             |  ||||||| |||||||||| ||| ||||| || || || |||||||||||||
Sbjct: 1531 gttttggaatcagaattttccaaggattttggtggactggaaagactggacatgt 1585