Jatropha Genome Database

JcCB0813871.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0813871.10 + phase: 0 
         (609 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30146.m003502 Auxin-responsive protein IAA6, putative                 246   1e-64

>30146.m003502 Auxin-responsive protein IAA6, putative
          Length = 963

 Score =  246 bits (124), Expect = 1e-64
 Identities = 169/184 (91%)
 Strand = Plus / Plus

                                                                       
Query: 314 catttctccagtttccaccaaaaacagtaacaacaacccaacagagcctgcctgttacgg 373
           ||||||| ||||||||| ||||||||||||||||||     |||| ||||||||||| ||
Sbjct: 290 catttcttcagtttccatcaaaaacagtaacaacaaatgctcagaacctgcctgttatgg 349

                                                                       
Query: 374 gaaaggaatcctcactgccctgttgcactaaagtggtagtagacttgcagcagagtgcag 433
            ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 caaaggaatcttcacagccctgttgcactaaagtggtagtagacttgcagcagagtgcag 409

                                                                       
Query: 434 aaaagaaggggttttcacagccaactcctgcaaatacagctgtgcccaacagctctcaga 493
           ||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct: 410 aaaagaaggcgttttcacagccagctcctgcaaatacagctgtgcccaacatctctcaga 469

               
Query: 494 aaag 497
           ||||
Sbjct: 470 aaag 473



 Score =  131 bits (66), Expect = 5e-30
 Identities = 139/162 (85%), Gaps = 6/162 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggagggtggttcaaagaatggcgaggcatgtcctcagttactggatttgattccaaga 60
           ||||||||| ||||||||||  | ||| ||||||||||||| || ||||| |||||||||
Sbjct: 1   atggagggttgttcaaagaacagtgagacatgtcctcagttgctagatttaattccaaga 60

                                                                       
Query: 61  gaaagagaatggcttgttaaaagagctgatgaaaga---tctacagaggag---aagaag 114
           |||||||||||||| ||||||||| |||| || | |   ||| ||||||||   ||||||
Sbjct: 61  gaaagagaatggctggttaaaagaactgacgagaaatcttcttcagaggagatcaagaag 120

                                                     
Query: 115 cttgaactaaggcttggtccacctggtgaagaatggtctctt 156
           |||||||||||||||| |||||| ||| ||||||||||||||
Sbjct: 121 cttgaactaaggcttgctccaccaggtcaagaatggtctctt 162