Jatropha Genome Database

JcCB0781371.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0781371.10 + phase: 0 /pseudo/partial
         (261 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29739.m003681 conserved hypothetical protein                          256   6e-68

>29739.m003681 conserved hypothetical protein
          Length = 2142

 Score =  256 bits (129), Expect = 6e-68
 Identities = 195/217 (89%)
 Strand = Plus / Plus

                                                                        
Query: 5    tggagaaaagcttaaaagcaacttgtgaggagttcattatgtcagtcactaaactgattg 64
            ||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||| | |
Sbjct: 1697 tggagaaaagcctaaaagcaacttgtgaggagttcattatgtcggtcactaagctggtcg 1756

                                                                        
Query: 65   tggatccaatgctgtcatttgctaccaaggttacggctgtaaaagttgcactgtcctctg 124
            ||||||||||||| |||||||||||||||||||| |||||||||||||||||||| || |
Sbjct: 1757 tggatccaatgctttcatttgctaccaaggttacagctgtaaaagttgcactgtcttccg 1816

                                                                        
Query: 125  gcagtcaaaatcagaaagtagagtcaattatggccaaaccactgaaggaccaagcctttg 184
            ||||||| | | |||||||||| |||||||||| ||||||||| ||||| ||||||||||
Sbjct: 1817 gcagtcagagtgagaaagtagactcaattatgggcaaaccacttaaggatcaagcctttg 1876

                                                 
Query: 185  ccagtccagagaaggtggcagaacttgtgcagaaggt 221
            | | |||||| |||||||| ||||||||  |||||||
Sbjct: 1877 ctactccagataaggtggctgaacttgttgagaaggt 1913