Jatropha Genome Database

JcCB0771211.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0771211.10 + phase: 0 /pseudo/partial
         (344 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29883.m002037 conserved hypothetical protein                          165   2e-40
29822.m003365 conserved hypothetical protein                           66   1e-10

>29883.m002037 conserved hypothetical protein
          Length = 1503

 Score =  165 bits (83), Expect = 2e-40
 Identities = 104/111 (93%)
 Strand = Plus / Plus

                                                                       
Query: 9   ttacattggaagcagttgctctcttcttgttatagacagaggaaaccgagctatcagaga 68
           |||||||||||||||||| ||||| |||||||||||||||||||| ||||||||| ||||
Sbjct: 639 ttacattggaagcagttgttctctgcttgttatagacagaggaaatcgagctatccgaga 698

                                                              
Query: 69  gatccaactccattttgatgactgtgcttatcaatatggaactggctttcc 119
           |||||||||||||||||||||||||||||||||||||| || ||| |||||
Sbjct: 699 gatccaactccattttgatgactgtgcttatcaatatgaaagtggttttcc 749



 Score =  129 bits (65), Expect = 1e-29
 Identities = 113/129 (87%)
 Strand = Plus / Plus

                                                                        
Query: 181  caggaagtccatatcagaagccccttaaatcagtcaggcgacctttaattccgaccgagg 240
            |||| ||||||||||||||||| || | |||||| ||||  ||||| ||||| || || |
Sbjct: 872  cagggagtccatatcagaagcctctcagatcagttaggccccctttgattccaactgaag 931

                                                                        
Query: 241  atgacctggagaagcatgaagaaggtttctttggatcccttggcaagctttttgccaatg 300
            |||| | |||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 932  atgaacaggagaagcatgaagaaggcttctttgggtcccttggcaagctttttgccaatg 991

                     
Query: 301  cttgggcat 309
            || ||||||
Sbjct: 992  ctggggcat 1000


>29822.m003365 conserved hypothetical protein
          Length = 1485

 Score = 65.9 bits (33), Expect = 1e-10
 Identities = 69/81 (85%)
 Strand = Plus / Plus

                                                                       
Query: 13  attggaagcagttgctctcttcttgttatagacagaggaaaccgagctatcagagagatc 72
           ||||||||||||||||||||||| |||||||| ||||| ||||  || ||  ||||||| 
Sbjct: 616 attggaagcagttgctctcttctggttatagatagagggaaccaggcaattcgagagatt 675

                                
Query: 73  caactccattttgatgactgt 93
           |||||| ||  ||||||||||
Sbjct: 676 caactcaatgatgatgactgt 696