Jatropha Genome Database

JcCB0750271.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0750271.10 + phase: 1 /partial
         (291 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29751.m001805 proliferating cell nuclear antigen, putative            276   7e-74

>29751.m001805 proliferating cell nuclear antigen, putative
          Length = 801

 Score =  276 bits (139), Expect = 7e-74
 Identities = 220/247 (89%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacaagataagatttcagattttgagatgaaactgatggacattgacagtgaacaccttg 60
           |||||||||| ||||| ||||| |||||||| || ||||||||||||||||| ||||| |
Sbjct: 320 cacaagataaaatttcggatttcgagatgaagctcatggacattgacagtgagcacctag 379

                                                                       
Query: 61  gaatcccagaggcagaatatcatgccattatcaggatgccatcagctgagtttgccaaaa 120
           |||| || ||||||||||||||||| ||| ||||||||||||||||||||||||| ||||
Sbjct: 380 gaattcctgaggcagaatatcatgctattgtcaggatgccatcagctgagtttgcaaaaa 439

                                                                       
Query: 121 tttgtagagatcttgcaagcattggtgatactgttgtgatctctgtttcaaaggaaggag 180
           |||||| |||||||| ||||||||| ||||||||||| || |||||| ||||||||||||
Sbjct: 440 tttgtaaagatcttggaagcattggggatactgttgttatatctgttacaaaggaaggag 499

                                                                       
Query: 181 tcaaattctccacaagaggcgatattggggctgcaaatgttgttctcaggcagaatacaa 240
           | || ||||||||||| || ||||||||| |||| ||| ||||| ||||||||||||| |
Sbjct: 500 taaagttctccacaaggggtgatattgggactgctaatattgttgtcaggcagaatacta 559

                  
Query: 241 cagtaga 247
           |||||||
Sbjct: 560 cagtaga 566