Jatropha Genome Database

JcCB0735771.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0735771.10 + phase: 2 /TE/pseudo/partial
         (623 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30115.m001231 DNA polymerase alpha catalytic subunit, putative        607   e-173

>30115.m001231 DNA polymerase alpha catalytic subunit, putative
          Length = 4581

 Score =  607 bits (306), Expect = e-173
 Identities = 495/558 (88%)
 Strand = Plus / Plus

                                                                        
Query: 8    atgttggcctcagaatggaagaaacctggtatgcttagccattttactgttgtccgcaag 67
            |||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||
Sbjct: 1777 atgttggcctcagaatggaaaaaacctggtatgctgagccattttactgttgtccgaaag 1836

                                                                        
Query: 68   cttgaaggggggatattcccaatggggttttccaaagaagtgactgaaaggaacacaaac 127
            ||||| ||||| ||||||||||||||||| |||||||| |||||||||||||| ||| | 
Sbjct: 1837 cttgatgggggaatattcccaatggggttctccaaagaggtgactgaaaggaatacacag 1896

                                                                        
Query: 128  gctggatcaaatgtattggccatagaaagcagtgaaagagctttgttgaaccgtttgatg 187
            || |||||||||||  | | ||| |||||||||||||||||||||||||| ||| |||||
Sbjct: 1897 gcaggatcaaatgttctaggcattgaaagcagtgaaagagctttgttgaatcgtctgatg 1956

                                                                        
Query: 188  attgcattgagcaaattggacagtgatgttcttgttggacataatatatctgggtttgac 247
            |||||||| | ||||||||| ||||||||||||||||| |||||||||||||| ||||||
Sbjct: 1957 attgcattaaacaaattggatagtgatgttcttgttgggcataatatatctggctttgac 2016

                                                                        
Query: 248  ctggacgttctccttcacagagctcaggcttgccgtgtaccaagcagcatgtggtccaaa 307
            ||||| ||||| || |||||| | |||||||| ||||| |||||||||||||||||||||
Sbjct: 2017 ctggatgttctactccacagatcccaggcttgtcgtgtgccaagcagcatgtggtccaaa 2076

                                                                        
Query: 308  ataggccgtctcaagcgttcagcgatgcctaagcttacaaaaggaaattctatatttgga 367
            || || ||||| ||||||||    |||||||||||||||||||||||| |||| ||||||
Sbjct: 2077 attggtcgtcttaagcgttctataatgcctaagcttacaaaaggaaatactatgtttgga 2136

                                                                        
Query: 368  tctggagcaagtccagggatcatgtcatgcattgctggtcggctcttgtgtgatacttat 427
            |||||||||||||||||||||||||| |||||||||||||| ||||| |||||||| |||
Sbjct: 2137 tctggagcaagtccagggatcatgtcttgcattgctggtcgcctcttatgtgatacatat 2196

                                                                        
Query: 428  ttgtgctcccgtgacctgttaaaagaggttagttattccttgacccaactagcaaggact 487
            ||||||||||| ||| ||||||||||||||||||||||  ||||  |||||||||| |||
Sbjct: 2197 ttgtgctcccgggacttgttaaaagaggttagttattctctgacagaactagcaagaact 2256

                                                                        
Query: 488  cggctgaacaaagaccgaaaggagatagctccacatgatattcctggaatgttccagaca 547
            || || |||||||| || |||||| |  | ||||||||||||||  ||||||||||| ||
Sbjct: 2257 cgcctaaacaaagatcggaaggaggttacaccacatgatattcccagaatgttccagtca 2316

                              
Query: 548  tcaaaatcccttattgaa 565
            || ||||| |||||||||
Sbjct: 2317 tcgaaatcgcttattgaa 2334