Jatropha Genome Database

JcCB0703531.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0703531.10 - phase: 0 /partial
         (786 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29780.m001319 RNA-binding protein Nova-1, putative                    141   7e-33

>29780.m001319 RNA-binding protein Nova-1, putative
          Length = 1635

 Score =  141 bits (71), Expect = 7e-33
 Identities = 164/195 (84%)
 Strand = Plus / Plus

                                                                        
Query: 555  ctcatcaactcagccagtttatggaccaggtggttatcctcttgagccatctcctgcaac 614
            |||||||| |||||| |||||||||| |||||| ||||||||| |||||||||||||  |
Sbjct: 1383 ctcatcaaatcagcctgtttatggacaaggtggatatcctcttcagccatctcctgccgc 1442

                                                                        
Query: 615  tgcaaattctgttcaggggacacatcctcttacttacgggcaggcacaggtggagacaca 674
             ||||||| || |||||| ||| ||||||||  ||| || ||| ||||| | ||| ||||
Sbjct: 1443 agcaaattatgctcagggaacaaatcctcttggttatggacagccacagcttgaggcaca 1502

                                                                        
Query: 675  accccagtcacagcagccaaacaatggccattcacagtcattggcttatggtgctgaaac 734
             || ||||||||||   ||||||| ||||||||||| |||||||| ||||| ||||||| 
Sbjct: 1503 gccacagtcacagccatcaaacaacggccattcacaatcattggcctatggagctgaaat 1562

                           
Query: 735  tcaggatgggaattc 749
            ||| |||||||||||
Sbjct: 1563 tcatgatgggaattc 1577



 Score =  133 bits (67), Expect = 2e-30
 Identities = 179/215 (83%), Gaps = 6/215 (2%)
 Strand = Plus / Plus

                                                                        
Query: 59   gtaattgggcccagccaggacaacctgttatgcaacaacagccccattatgggtatgcac 118
            ||||||||||||||||||||||| ||  |||||||||||   |||| ||||| |||||||
Sbjct: 821  gtaattgggcccagccaggacaaactcctatgcaacaac---cccaatatggatatgcac 877

                                                                        
Query: 119  aaccagcaactcaacctatgccctcttcttactatggcaactatgcccagcaacaatctt 178
            |||||| ||  ||||||| |||| || | |||||||| |||||  |||||||||   |||
Sbjct: 878  aaccaggaaaccaacctacgccccctgcatactatggtaactacacccagcaacctgctt 937

                                                                        
Query: 179  gggatcagtcaaacccatcaacagtgtctcaaatgcctcagcaaatgactggatatggtt 238
            ||||||| ||||||||| | ||  |||||||||   | ||||||||| | |||||||| |
Sbjct: 938  gggatcaatcaaacccaacgaccatgtctcaaa---cacagcaaatggccggatatgggt 994

                                               
Query: 239  actatggacaaccaccccaaatgggatctgctcct 273
            |||||||||||| ||| ||||||||||| ||||||
Sbjct: 995  actatggacaacaacctcaaatgggatcagctcct 1029