Jatropha Genome Database

JcCB0696171.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0696171.10 + phase: 0 /pseudo/partial
         (249 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29908.m006221 Vacuolar protein sorting-associated protein VPS9, ...   256   5e-68

>29908.m006221 Vacuolar protein sorting-associated protein VPS9,
           putative
          Length = 1434

 Score =  256 bits (129), Expect = 5e-68
 Identities = 168/181 (92%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttgcccagaaagaactgcaaaagatcaacatgtacaaagcaccaagagacaaacttgtg 60
           ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| 
Sbjct: 412 cttgctcagaaagaactgcaaaagatcaatatgtacaaagcaccaagagacaaacttgta 471

                                                                       
Query: 61  tgcattctcaattgttgcaaggtcataaataacttattgcttaatgcatcaattgcttcc 120
           ||||||||||| |||||||||||||| ||||||||| | |||||||| ||||||||||| 
Sbjct: 472 tgcattctcaactgttgcaaggtcattaataacttacttcttaatgcttcaattgcttca 531

                                                                       
Query: 121 aatgagaatcctcctggagctgatgaatttcttcctgtcctaatatatgttactataaag 180
           ||||||||||| ||||||||||||||||||||||||||| | |||||||||||| |||||
Sbjct: 532 aatgagaatccccctggagctgatgaatttcttcctgtcgttatatatgttactttaaag 591

            
Query: 181 g 181
           |
Sbjct: 592 g 592