Jatropha Genome Database

JcCB0695521.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0695521.10 - phase: 0 /pseudo/partial
         (462 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29851.m002398 conserved hypothetical protein                          236   9e-62

>29851.m002398 conserved hypothetical protein
          Length = 417

 Score =  236 bits (119), Expect = 9e-62
 Identities = 176/195 (90%)
 Strand = Plus / Plus

                                                                       
Query: 173 tgtctgagtgcaatgaaatatgctacaaggaccctgtatttaaggatcagcagtggagtg 232
           |||| |||||||||||||||||||||||||| ||||| || ||||| |||||||||||||
Sbjct: 134 tgtcagagtgcaatgaaatatgctacaaggatcctgtcttcaaggaccagcagtggagtg 193

                                                                       
Query: 233 catacattgacaggtcacctggagctgccagttattctgaggaatgcttccatgcctgtg 292
           | || |||||| |||| |||||||||||||| || |||||||||||||||||||||||||
Sbjct: 194 cttatattgaccggtctcctggagctgccagatactctgaggaatgcttccatgcctgtg 253

                                                                       
Query: 293 tagctggctgtggttacaagtttgaaattgaaccagataaagttgatcaggttcgaccaa 352
           ||||||| |||||||||| ||||||||||||| |||| ||||| |||||| |||| ||||
Sbjct: 254 tagctggttgtggttacaggtttgaaattgaagcagagaaagtcgatcagattcgtccaa 313

                          
Query: 353 acaggccaagcaagc 367
           |||||||| ||||||
Sbjct: 314 acaggccatgcaagc 328



 Score = 60.0 bits (30), Expect = 1e-08
 Identities = 48/54 (88%)
 Strand = Plus / Plus

                                                                 
Query: 36  ggagagtgttctgcaagaagggatgtgatgctgatggagaaacatgggaagaat 89
           ||||||| || ||||| || || |||||||| ||||||||||||||||||||||
Sbjct: 77  ggagagtattttgcaaaaaaggttgtgatgcagatggagaaacatgggaagaat 130