Jatropha Genome Database

JcCB0691701.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0691701.10 + phase: 0 
         (174 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30147.m014191 40S ribosomal protein S20, putative                      52   1e-06

>30147.m014191 40S ribosomal protein S20, putative
          Length = 375

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 95/118 (80%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggcagcagcgtatggagcaatgaagccggccaaggctgggttggaggaaccccaggag 60
           |||||||| || || ||||| ||||| || || ||||||||  |||||||  | |  |||
Sbjct: 1   atggcagcggcatacggagctatgaaaccagcaaaggctggtctggaggagtcaccagag 60

                                                                     
Query: 61  cagattcacaagatcagaatcactctgtcctcaaagaatgtcaaaaacctcgaaaaag 118
           |||||||| |||||||| |||||||| || || || |||||||| || || |||||||
Sbjct: 61  cagattcataagatcaggatcactctatcttccaaaaatgtcaagaatcttgaaaaag 118