Jatropha Genome Database

JcCB0691211.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0691211.10 + phase: 0 
         (255 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30174.m008934 mads box protein, putative                               86   1e-16
29804.m001536 mads box protein, putative                               56   1e-07

>30174.m008934 mads box protein, putative
          Length = 735

 Score = 85.7 bits (43), Expect = 1e-16
 Identities = 136/167 (81%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggggagaggaagggtagaattgaagagaattgagaataaaataaatcgacaagtaaca 60
           ||||| |||||||| ||||| |||||||| || || || ||||| ||||| ||||| || 
Sbjct: 1   atgggaagaggaagagtagagttgaagaggatagaaaacaaaatcaatcgccaagtgacc 60

                                                                       
Query: 61  tttgccaagaggagaaatgggttgcttaagaaagcttacgagctatctgttctttgcgat 120
           ||  | || ||||| ||||| ||| | || |||||||| ||||| ||||| ||||| |||
Sbjct: 61  ttctctaaaaggaggaatggattgttgaaaaaagcttatgagctgtctgtgctttgtgat 120

                                                          
Query: 121 gcagaggttgctcttatcattttctctaatcgtggcaagctttatga 167
           || |||||||||||||| || ||||| | |||||| ||||| |||||
Sbjct: 121 gctgaggttgctcttattatcttctccagtcgtggaaagctctatga 167


>29804.m001536 mads box protein, putative
          Length = 801

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 67/80 (83%)
 Strand = Plus / Plus

                                                                       
Query: 67  aagaggagaaatgggttgcttaagaaagcttacgagctatctgttctttgcgatgcagag 126
           ||||| |||||||||||||| |||||||||   ||| | ||  |||||||||||||||| 
Sbjct: 148 aagagaagaaatgggttgctaaagaaagctagagagttgtcaattctttgcgatgcagaa 207

                               
Query: 127 gttgctcttatcattttctc 146
           |||| | ||||||| |||||
Sbjct: 208 gttggtgttatcatcttctc 227