Jatropha Genome Database

JcCB0647611.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0647611.10 + phase: 0 /partial
         (326 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28320.m001108 Protein AFR, putative                                   299   5e-81

>28320.m001108 Protein AFR, putative
          Length = 1311

 Score =  299 bits (151), Expect = 5e-81
 Identities = 261/300 (87%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttgacaccacagcctgtttgtgtagagtagacgcaggcctcaaaacggttgccagtgcn 60
           ||||| || ||||||||||| ||||||||||| ||  |||||||||| ||||||| ||| 
Sbjct: 52  gttgatacgacagcctgtttatgtagagtagatgccagcctcaaaaccgttgccaatgca 111

                                                                       
Query: 61  nnnnnntatgtccctgggtctaagctttgtcttcaaccagacattaaaccatccattcat 120
                 || || || || ||||| || || || |||||||| ||||||||||||||||||
Sbjct: 112 aaaagatacgttccgggatctaaactctgcctgcaaccagatattaaaccatccattcat 171

                                                                       
Query: 121 cctactaggagcaagccatcacgtggtgacaggagtcggaaccaatctcctctgcttcca 180
           || ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 172 cccactaggagcaagccatcacgtggtgacaggagtaggaaccaatctcctctgctacca 231

                                                                       
Query: 181 ggactccctgatgatcttgctattgcttgcctgatacgggtcccaaggatagagcactgt 240
           || ||||||||||||||||||||||| ||||||||  | ||||||||| |||||||| | 
Sbjct: 232 ggcctccctgatgatcttgctattgcatgcctgatcagagtcccaagggtagagcaccgc 291

                                                                       
Query: 241 aagctacggctagtgtgcaaacgatggtatcgtcttttggctggaaacttcttctactca 300
           ||||| ||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||
Sbjct: 292 aagctgcggctagtgtgcaaaagatggtatcgtcttttggccggaaatttcttctactca 351