Jatropha Genome Database

JcCB0638431.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0638431.10 + phase: 2 /partial
         (485 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29726.m003989 conserved hypothetical protein                          303   5e-82

>29726.m003989 conserved hypothetical protein
          Length = 864

 Score =  303 bits (153), Expect = 5e-82
 Identities = 222/245 (90%)
 Strand = Plus / Plus

                                                                       
Query: 241 ctacaaagcagatagaggtgcgcatgtttactggctagagaaggggactgttgaagttcg 300
           ||||||||||||||||||||| |||||||| ||| |  ||||||||| ||| ||||||||
Sbjct: 510 ctacaaagcagatagaggtgcacatgtttattggttgcagaaggggattgtagaagttcg 569

                                                                       
Query: 301 tccagatcacatcttaaatcttatacattatgaggacgcagcttctctctctattgcaat 360
           ||| ||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||
Sbjct: 570 tcctgatcacatcttaaatcttatacactatgaggatgcagcttctctctccattgcaat 629

                                                                       
Query: 361 cttgaaaaagaaattccgtggccaaattttcttgggttgtgataatcatccattatcccg 420
           |||||| |||||||||| ||| | |||||| ||||||||||||||||||||||||||| |
Sbjct: 630 cttgaagaagaaattccatgggcgaatttttttgggttgtgataatcatccattatccag 689

                                                                       
Query: 421 gcaggaggtgatggatttggttgctaagagtgggaaattcagtaaaaagtttgaaggctt 480
           |||||| |||||||| ||||||||||| ||||||||||| |||||||||||||| | |||
Sbjct: 690 gcaggaagtgatggacttggttgctaaaagtgggaaatttagtaaaaagtttgaggcctt 749

                
Query: 481 tactg 485
           |||||
Sbjct: 750 tactg 754



 Score =  186 bits (94), Expect = 8e-47
 Identities = 160/182 (87%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggaagctgctttgagctggaatggagaaggatctttcttgttcacatcaagttctgcacc 60
           |||||||||||| ||||||||||||||||| |||||||| || ||||| || ||||||||
Sbjct: 327 ggaagctgctttaagctggaatggagaaggttctttcttatttacatcgagctctgcacc 386

                                                                       
Query: 61  ttatgattgcaatgacaatggagaatgtgatgaggactctcctgcagtgccgattgggag 120
            ||||| ||| ||||||| ||||| ||||||||||||||||| | |||||| |||||| |
Sbjct: 387 atatgactgctatgacaacggagattgtgatgaggactctccagtagtgccaattgggcg 446

                                                                       
Query: 121 aagtccaaggactgatgtgcttctaaatgcagaaaaagtagtgctggagagcaatggctg 180
           ||| || ||||| || ||||||||||| |||||||||||||||||||||||  |||||||
Sbjct: 447 aagcccgaggacagacgtgcttctaaaggcagaaaaagtagtgctggagagtgatggctg 506

             
Query: 181 tg 182
           ||
Sbjct: 507 tg 508