Jatropha Genome Database
- JcCB0635861.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0635861.10 - phase: 1 /partial
(973 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29738.m000999 RNA binding protein, putative 502 e-141
>29738.m000999 RNA binding protein, putative
Length = 5235
Score = 502 bits (253), Expect = e-141
Identities = 773/946 (81%), Gaps = 9/946 (0%)
Strand = Plus / Plus
Query: 1 attcttggggtgttttagaagctacattggtgccatttttcctgagatcagctggtcttt 60
|||| |||| ||| |||||||| || ||||| || |||||||| |||||||||||||||
Sbjct: 365 attcgtgggatgtattagaagcaactttggttccttttttcctaagatcagctggtcttg 424
Query: 61 cagtaggtatgtctcaaaatgaagaatcagatatctttgaatgggatcagtattcagttc 120
|| | | |||| ||||||||||||||| |||||||||||||||| ||| ||||||||
Sbjct: 425 caatggatatgcttcaaaatgaagaatcggatatctttgaatgggctcaacattcagttt 484
Query: 121 tgcaaggtttagatggcatgatagataatttgaatctggataaagagtttatcctctctc 180
|| ||| |||| |||||||| ||| ||| ||||||||||||| || || ||||
Sbjct: 485 tg------ttaagtggcctgatagatgattccaatttggataaagagttcatgctgtctc 538
Query: 181 tatctgggtcatttccactttccatatcatgccatgttttaaccttaatactagattctg 240
| |||||||| |||||| | | |||||||| ||||| ||| || ||||||| ||||||
Sbjct: 539 tttctgggtcttttccattgccaatatcatgtcatgtcttagccataatactggattcta 598
Query: 241 ctctgcaaagtttccaggcagcttcaactacagaatcaatgttggaaaatgactcttgtt 300
|| | ||||||| | | || || |||| |||||||||||| ||||||||| |||| ||
Sbjct: 599 ctttacaaagttgcaatgctgcatcaaggacagaatcaatggtggaaaatgggtcttctt 658
Query: 301 atgcggatcagttgtttagcaaattgctttgggatctttgcaatatgagtgagcgattat 360
|||| | || |||| ||||| ||||||||||| || || ||||||||||||||
Sbjct: 659 atgcacaaaagctgttctataaattactttgggatctatgtaacatgagtgagcgattgc 718
Query: 361 tttcacgaagtttggaacaccggtcttgtgctattagctttcttctcccagttgatgagg 420
||| | |||||||||||||||||| ||||||| | ||||||||||||||||||||| |
Sbjct: 719 ttttgcaaagtttggaacaccggtcctgtgctactggctttcttctcccagttgatgctg 778
Query: 421 aaagcttagtgaggaagcaatcattacatatattgaaaagagtactacaaataagtgaag 480
||||||| || |||||||||||||||||||||||||||||||||||||| || ||| |
Sbjct: 779 aaagcttggtcaggaagcaatcattacatatattgaaaagagtactacagttaggtgctg 838
Query: 481 agggccagcgcaactcttttgttccagagaagaaatcacgagagaaacattcagtccctc 540
|||| ||| ||| | | ||||||||||||| | |||||| ||||| | |||
Sbjct: 839 gaacccagtccaattctcctaatacagagaagaaatcgcaggagaaatattcaattccta 898
Query: 541 atggtatgacaaaaagggaaatgtgggctaacaaggaagctaaatcactgggtgtagggg 600
||||||||||||| |||| ||| |||||| |||||||||||||||||||||||||||||
Sbjct: 899 atggtatgacaaagagggcaatatgggctgacaaggaagctaaatcactgggtgtaggga 958
Query: 601 aaatctgtagttcaattgattctcccttagacattcagcagcagtgggaggcattcatac 660
|| | |||| || || |||||||| ||||| || |||||||||||||||||| || |
Sbjct: 959 aactttgtaactccatggattctcctttagatggtcggcagcagtgggaggcatttattc 1018
Query: 661 ttcaatatgagatgcttgaagagtatggtactcatctggtagaagctgcctgggatcatc 720
||| ||||| |||||||| ||||||||||||||| | || |||||||| ||||| || |
Sbjct: 1019 ttctctatgaaatgcttgaggagtatggtactcatttagttgaagctgcttgggagcacc 1078
Query: 721 agataaccttgttgcttcagttttcagtatcacgtgataatttcgcgagctctatttgtg 780
|| ||||||||||||||||||||||||| ||| ||||||||| || | |||||| ||||
Sbjct: 1079 aggtaaccttgttgcttcagttttcagtttcatatgataattttgcaaactctatctgtg 1138
Query: 781 ggagagtttgccagagtgaggttgaagatttaggtgaagtttttacttggttaacaattt 840
|| || || | | || || || |||||||||||| |||| ||||||||| ||||
Sbjct: 1139 ---gaattcagcaaaatcagactgcagttttaggtgaagtctttagttggttaacgattt 1195
Query: 841 tgtggcaactgggttttcgtcatgacaatccccaagttaggtgcttgatcatgcagtcat 900
| ||||||||||||||||||||||||||||| |||||||||||||| || ||||| ||||
Sbjct: 1196 tatggcaactgggttttcgtcatgacaatccgcaagttaggtgcttaataatgcaatcat 1255
Query: 901 ttttgggcattgagtggatggagtatggtgatgctgcaaaatcagt 946
| ||||| || ||||||||| ||||| ||||||||||||||||||
Sbjct: 1256 tcttgggaatcgagtggatgaagtatcatgatgctgcaaaatcagt 1301