Jatropha Genome Database

JcCB0611681.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0611681.10 - phase: 1 /pseudo/partial
         (377 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29333.m001046 conserved hypothetical protein                          214   3e-55
29794.m003344 protein phosphatase pp2a regulatory subunit B, put...   103   7e-22

>29333.m001046 conserved hypothetical protein
          Length = 318

 Score =  214 bits (108), Expect = 3e-55
 Identities = 138/148 (93%)
 Strand = Plus / Plus

                                                                       
Query: 230 aggaaatggtagtgttgctagttcaagtacttcaagtagtgctaaaccatatattgcaaa 289
           |||||||||||||||||||||||| |||| ||||||||||||||||||| || |||||||
Sbjct: 129 aggaaatggtagtgttgctagttcgagtaattcaagtagtgctaaaccacatcttgcaaa 188

                                                                       
Query: 290 tggaggttggccagagaagtcatacagttgtccaagcaatgacttcactttcccacctgg 349
           |||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct: 189 tggaggctggccagagaagtcatacagttgtccaagcaacgacttcactgtcccacctgg 248

                                       
Query: 350 aggcattccatcactgcgtttacctgtg 377
            |||||| ||||||||||||| ||||||
Sbjct: 249 gggcatttcatcactgcgtttccctgtg 276


>29794.m003344 protein phosphatase pp2a regulatory subunit B,
           putative
          Length = 1542

 Score =  103 bits (52), Expect = 7e-22
 Identities = 145/176 (82%)
 Strand = Plus / Plus

                                                                       
Query: 49  agtttgattatctcaagagcttgaaaatagaagagaaaatcaacaaaatcagatggtgcc 108
           ||||||||||||| | ||||||| | || || |||||||| ||||| || ||||||||||
Sbjct: 311 agtttgattatctaaggagcttggagattgaggagaaaattaacaagattagatggtgcc 370

                                                                       
Query: 109 aaacagccaatggcgctctttttctcctatctactaatgataagaccattaagttttgga 168
           || |||| ||||| || || ||||| || || || ||||| || ||||| || |||||||
Sbjct: 371 aatcagctaatggtgccctgtttcttctgtcgacgaatgacaaaaccataaaattttgga 430

                                                                   
Query: 169 aggtccaagaaaagaaggttaagaaaatttctgacatgaatgtggacccttcaaaa 224
           |||||||||| |||||||| |||||| | |   |||||||||| |||||| |||||
Sbjct: 431 aggtccaagagaagaaggtcaagaaagtgtgcaacatgaatgttgaccctgcaaaa 486