Jatropha Genome Database

JcCB0597261.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0597261.20 + phase: 0 /partial
         (248 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

27894.m000784 similarity to rab3 gtpase-activating protein non-c...   198   1e-50

>27894.m000784 similarity to rab3 gtpase-activating protein
           non-catalitic subunit, putative
          Length = 1455

 Score =  198 bits (100), Expect = 1e-50
 Identities = 211/248 (85%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtcgtctaagcgaaatcacacgacggagctgggatgcatagcgtgcgaggagctgagc 60
           ||||| || ||| ||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1   atgtcatcgaagagaagtcacacgacggagctggggtgcatagcgtgcgaggagctgagc 60

                                                                       
Query: 61  gacgttggcgcaggaaaggaaggttggctggtggataacccgagtcttctatgcgcgctt 120
           || || || || ||||||||||||||||| || || ||||| |  |||  |||||| |||
Sbjct: 61  gatgtaggagctggaaaggaaggttggcttgttgacaacccaaaccttaaatgcgctctt 120

                                                                       
Query: 121 gacacccactctatcgctctcgcaaatcgttctctcatcttaatcaccggatgggacgat 180
           |||||||| || |||||  |  ||||||| | |||||| |||||||| || |||||||||
Sbjct: 121 gacacccattccatcgccatttcaaatcgctatctcattttaatcactggttgggacgat 180

                                                                       
Query: 181 gggccccgcctcaagatccgacccaatttatctcccatcgagtctgaatctatcaccgca 240
           |||||||| ||||||||||||||| ||||||| |||||||| || ||||| |||||||| 
Sbjct: 181 gggccccgtctcaagatccgacccgatttatcccccatcgaatccgaatccatcaccgcc 240

                   
Query: 241 ttggagtg 248
            |||||||
Sbjct: 241 ctggagtg 248