Jatropha Genome Database

JcCB0590701.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0590701.10 - phase: 0 /pseudo
         (313 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30076.m004698 importin alpha, putative                                 82   2e-15
30128.m008884 importin alpha, putative                                 50   8e-06

>30076.m004698 importin alpha, putative
          Length = 237

 Score = 81.8 bits (41), Expect = 2e-15
 Identities = 59/65 (90%)
 Strand = Plus / Plus

                                                                      
Query: 1  atgtcgttgaggccaagtgctaggacggaggtgcggaggaataagtacaaggtggcggtg 60
          |||||||||||||| || || |||||||||||| ||||||| |||||||| |||||||||
Sbjct: 1  atgtcgttgaggccgagcgcgaggacggaggtgaggaggaacaagtacaaagtggcggtg 60

               
Query: 61 gatgc 65
          |||||
Sbjct: 61 gatgc 65


>30128.m008884 importin alpha, putative
          Length = 1596

 Score = 50.1 bits (25), Expect = 8e-06
 Identities = 55/65 (84%)
 Strand = Plus / Plus

                                                                      
Query: 1  atgtcgttgaggccaagtgctaggacggaggtgcggaggaataagtacaaggtggcggtg 60
          |||||||||||||| || ||||| || ||||| || ||||| |  ||||| |||||||||
Sbjct: 1  atgtcgttgaggccgagcgctagaaccgaggttcgaaggaacagatacaaagtggcggtg 60

               
Query: 61 gatgc 65
          |||||
Sbjct: 61 gatgc 65