Jatropha Genome Database

JcCB0588921.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0588921.10 - phase: 0 /pseudo/partial
         (539 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28320.m001106 hypothetical protein                                    462   e-129

>28320.m001106 hypothetical protein
          Length = 1224

 Score =  462 bits (233), Expect = e-129
 Identities = 384/435 (88%), Gaps = 7/435 (1%)
 Strand = Plus / Plus

                                                                       
Query: 105 catcttggtaaatattttaagcagtctgccaaggctttagaacagcaggttgcaagggaa 164
           |||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||
Sbjct: 313 catcttggtaaatattttaagcagtctgccaaagctttcgaacagcagattgcaagggaa 372

                                                                       
Query: 165 gcgagattttatggtgctttaatcagctgatagattgcagcaaaactggaaagttaaacg 224
           || ||||||||||||||| |||||||       ||||||||||||||||||||| |||||
Sbjct: 373 gcaagattttatggtgctctaatcag-------attgcagcaaaactggaaagtcaaacg 425

                                                                       
Query: 225 gcagcgcgtggcagcaattgctcctgggaatgaaggattcaccatcgatctttttgacaa 284
           ||||||| |||| |||| |||||   | ||||| || |||||||| ||||||||||| ||
Sbjct: 426 gcagcgcatggcggcaactgctctcagcaatgagggcttcaccattgatctttttgataa 485

                                                                       
Query: 285 ttcattatacgattcagcatctctatttcggcccacctctctatctaccattcgcattga 344
           |||| |||| |||||||| ||||||||||| ||| | ||||||||||||||||| |||||
Sbjct: 486 ttcactatatgattcagcctctctatttcgtcccccttctctatctaccattcgtattga 545

                                                                       
Query: 345 ccatgactcagctggcatgctagctatagatttacctccaaaatcttgccgttctcttca 404
           |||||||||||||||||||||||||||| ||||||||||||  |||||||| ||||||||
Sbjct: 546 ccatgactcagctggcatgctagctataaatttacctccaagttcttgccgctctcttca 605

                                                                       
Query: 405 ttttggttttcttggtgtacattccaatgaagatgtaaagaaatcctctaaaattaaaag 464
           ||||||||||||||||||||||||||||||  |  ||||||||| | |||||||||||||
Sbjct: 606 ttttggttttcttggtgtacattccaatgacaacataaagaaatgcactaaaattaaaag 665

                                                                       
Query: 465 ctcatattcagttgagcatccttcaaaagaaactgagaaagaatctgcaagtgataatga 524
            |||| ||||||||||||| | ||||||||| ||||||||||||||  ||||||||||||
Sbjct: 666 ttcatgttcagttgagcattcatcaaaagaagctgagaaagaatctctaagtgataatga 725

                          
Query: 525 aagcattaaagaaac 539
           | || | ||||||||
Sbjct: 726 atgcgtgaaagaaac 740