Jatropha Genome Database
- JcCB0585631.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0585631.10 + phase: 2 /TE/partial
(969 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
27758.m000324 dead box ATP-dependent RNA helicase, putative 509 e-144
>27758.m000324 dead box ATP-dependent RNA helicase, putative
Length = 3522
Score = 509 bits (257), Expect = e-144
Identities = 567/666 (85%), Gaps = 11/666 (1%)
Strand = Plus / Plus
Query: 304 caggtaaaacttggacccttgaaggagaatccgatgatgaagaagcacctcccacaggga 363
||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct: 932 caggtaagacttggacccttgaaggagaatctgatgatgaagaagcacctcttgcaggga 991
Query: 364 aatcagggacggacatggacatggacctggatgaaaatacaaagcctgataaagaaattg 423
|||||| ||| | || |||||||||||||||||| ||||||||||| |||||||||
Sbjct: 992 aatcagagac--aaat----atggacctggatgaaaatgcaaagcctgatgaagaaattg 1045
Query: 424 gagattcaatggtggtagattctgaaaatgtagcagctgcttcagagaantgggggtgat 483
||||| ||||||||||||| ||| | |||| ||||| ||||||| || ||||| | ||
Sbjct: 1046 gagatgcaatggtggtagactcttataatggcacagctacttcaga-aaatggggataat 1104
Query: 484 agtgttatgggggatgaggaaattgatccattagacgccttttatgaattccatggtgtt 543
||| || | |||||||||||||||||| |||| || ||| |||||||||||||| ||
Sbjct: 1105 gatgtcatcgaggatgaggaaattgatcccctagatgc-tttcatgaattccatggtctt 1163
Query: 544 acctgaagttgagaagctaaacaatgcaactattactcaaagttttgacggtagtaaact 603
|||||||||||||||||||||||||||| |||||| ||| | |||||| | |||| |
Sbjct: 1164 acctgaagttgagaagctaaacaatgcagtgattactgaaactgttgacgaaaataaagt 1223
Query: 604 ggagtcaaagaagaacgagaaaaaagaaagaattaatggagaccagctgaagaaaagctc 663
||||| |||||||| || || ||| ||| | | ||||| ||||||||||| ||||
Sbjct: 1224 ggagttgaagaagaaaaaggaagaag---gaaatgagggagagaagctgaagaaaggctc 1280
Query: 664 tactaaatctctggggagaataattcctggtgaagattcggattcagaatttgtggacct 723
|| |||||||||||||||||||| ||||| || ||||| |||||||| | | |||||
Sbjct: 1281 taacaaatctctggggagaataatacctggggaggattctgattcagattacggagacct 1340
Query: 724 tgaaaatgatgaagatcctttagatgaagaagatgatgacgagttcatgaaaagggtaaa 783
||| |||||||||| |||||||||||| ||||||||||| ||||||||||| ||||| ||
Sbjct: 1341 tgagaatgatgaaggtcctttagatgatgaagatgatgatgagttcatgaagagggtcaa 1400
Query: 784 gaagacaaaagctgagaaactttctgttgttgatcattcaaagattgattacaaaccttt 843
|||||||||||| ||||| || ||||||||||| || |||||||||||||| ||||| ||
Sbjct: 1401 gaagacaaaagcagagaagctatctgttgttgaccactcaaagattgattataaaccatt 1460
Query: 844 ccggaaaaatttctatattgaagtgaaggagatatcgaggatgactcctgaagaggtggc 903
|| ||||||||||| || ||||||||||||||||| || ||| |||| |||||||| ||
Sbjct: 1461 tcgaaaaaatttctacatagaagtgaaggagatatcaagaatggctccggaagaggttgc 1520
Query: 904 tgcttacaggaaacagttagaattgaaaatacatggaaaggatgttccaaaaccagttaa 963
|||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1521 tgcttataggaaacaattagaactgaaaatacatggaaaggatgttccaaaaccagttaa 1580
Query: 964 aacatg 969
||||||
Sbjct: 1581 aacatg 1586
Score = 71.9 bits (36), Expect = 7e-12
Identities = 87/103 (84%), Gaps = 2/103 (1%)
Strand = Plus / Plus
Query: 46 gaactgagcaatagcagatcaaacaggcacagagatggcactgaagggagcccaagggaa 105
|||| ||||| |||||| |||| ||||||||| |||| | ||| |||||||||||| |
Sbjct: 676 gaacagagcactagcaggtcaagcaggcacagggatgaaagtgatgggagcccaagg--a 733
Query: 106 aaaagagcagtgaggatgactcagataagaaagagaagaaaac 148
||||||| |||||||||| | ||||||||||||||||||||
Sbjct: 734 aaaagagtggtgaggatgaattggataagaaagagaagaaaac 776