Jatropha Genome Database
- JcCB0584071.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0584071.10 - phase: 1 /pseudo/partial
(915 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29983.m003121 nucleic acid binding protein, putative 151 9e-36
30128.m008805 nucleic acid binding protein, putative 64 2e-09
29794.m003304 nucleic acid binding protein, putative 56 4e-07
29647.m001996 nucleic acid binding protein, putative 56 4e-07
29780.m001361 zinc finger protein, putative 56 4e-07
29883.m001956 nucleic acid binding protein, putative 56 4e-07
>29983.m003121 nucleic acid binding protein, putative
Length = 1314
Score = 151 bits (76), Expect = 9e-36
Identities = 211/254 (83%), Gaps = 9/254 (3%)
Strand = Plus / Plus
Query: 88 ggagggatagtttcatcactcatagggcattttgtgatgccttagcagaagaaactgcaa 147
|||||||||| ||||| ||||||||||||||||||||||| ||||||||||| || ||||
Sbjct: 356 ggagggatagcttcattactcatagggcattttgtgatgctttagcagaagagacagcaa 415
Query: 148 gagtaaatgcagcaacaagcataaacagcttagcag---cttcaacaaatttcaactatc 204
|||| ||||||||| | | |||||| | ||||| | || ||| || ||||| ||||
Sbjct: 416 gagttaatgcagcatctaacataaatggattagctgctactgcaaacaacttcaattatc 475
Query: 205 atctaatgggagcaccaatagggcctaataacatggcacaacatttctcttctattttca 264
|||||||||| || |||||||| || |||||||||||| |||||||||||||||||||
Sbjct: 476 atctaatgggtgctccaataggtcc---taacatggcacagcatttctcttctattttca 532
Query: 265 agccaatctcaagttctaatgaccaacaaacaattgatcaaacaagaagaggacttccct 324
|||||||| |||| ||||||| || ||||| || ||||||||||||||| | |||
Sbjct: 533 agccaatcccaagcaataatgac---cacacaatggaccaaacaagaagaggattgtcct 589
Query: 325 tatgggtaagccaa 338
||||| | ||||||
Sbjct: 590 tatggatgagccaa 603
Score = 131 bits (66), Expect = 8e-30
Identities = 87/94 (92%)
Strand = Plus / Plus
Query: 649 cagcaaatatgtctgcaacagctttactgcaaaaagctgctcaaattggtgcaacttcaa 708
|||| |||||||| || ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 905 cagctaatatgtcagctacagctttacttcaaaaagctgctcaaattggtgcaacttcaa 964
Query: 709 ctgacccatcatttcttggaagttttgggttaaa 742
|||| ||| ||||||| |||||||||||||||||
Sbjct: 965 ctgatccaacatttctgggaagttttgggttaaa 998
>30128.m008805 nucleic acid binding protein, putative
Length = 1542
Score = 63.9 bits (32), Expect = 2e-09
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 86 caggagggatagtttcatcactcatagggcattttgtgatgccttagcagaagaaa 141
|||||||||||| ||||| ||||||||||| |||||||||||| || | |||||||
Sbjct: 630 caggagggatagcttcattactcatagggctttttgtgatgccctaactgaagaaa 685
>29794.m003304 nucleic acid binding protein, putative
Length = 1341
Score = 56.0 bits (28), Expect = 4e-07
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 87 aggagggatagtttcatcactcatagggcattttgtgatgccttagcagaagaaactgca 146
||||| || |||||||||||||| || || || |||||||| ||||||||||| | ||||
Sbjct: 412 aggagagacagtttcatcactcacagagctttctgtgatgcattagcagaagagagtgca 471
Query: 147 agag 150
||||
Sbjct: 472 agag 475
>29647.m001996 nucleic acid binding protein, putative
Length = 1896
Score = 56.0 bits (28), Expect = 4e-07
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 657 atgtctgcaacagctttactgcaaaaagctgctcaaattggtgcaact 704
||||| |||||||| |||||||||||||| || ||||| |||||||||
Sbjct: 1171 atgtcagcaacagccttactgcaaaaagcagcgcaaatgggtgcaact 1218
>29780.m001361 zinc finger protein, putative
Length = 1716
Score = 56.0 bits (28), Expect = 4e-07
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 657 atgtctgcaacagctttactgcaaaaagctgctcaaattggtgcaact 704
||||||||||| ||||| || ||||||||||||||||| ||| |||||
Sbjct: 1213 atgtctgcaactgctttgctccaaaaagctgctcaaatgggttcaact 1260
>29883.m001956 nucleic acid binding protein, putative
Length = 1401
Score = 56.0 bits (28), Expect = 4e-07
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 86 caggagggatagtttcatcactcatagggcattttgtgatgccttagcagaagaaactgc 145
||||| |||||| || || || || |||||||| |||||||| ||||||||||||| |||
Sbjct: 570 caggaaggatagctttataacacacagggcattctgtgatgcattagcagaagaaagtgc 629
Query: 146 aaga 149
||||
Sbjct: 630 aaga 633