Jatropha Genome Database

JcCB0580221.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0580221.10 + phase: 0 
         (600 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29889.m003326 conserved hypothetical protein                          210   7e-54

>29889.m003326 conserved hypothetical protein
          Length = 735

 Score =  210 bits (106), Expect = 7e-54
 Identities = 270/325 (83%), Gaps = 6/325 (1%)
 Strand = Plus / Plus

                                                                       
Query: 185 atgcaccaagttcgaatggagtttccgtggaacaagtgaagttggaaggtgagaagactg 244
           ||||||||| ||| |||||  || | ||||| ||| |||||||||| || |||||| || 
Sbjct: 194 atgcaccaaattcaaatgggattcctgtggagcaactgaagttggagggagagaaggcta 253

                                                                       
Query: 245 ttgatcatgctg------agaagaaagtggtaaaagagaagcgtaaaaagatgagcaaca 298
           |||||||||| |      |||||||||| ||||| |||||||||||||| ||| |  | |
Sbjct: 254 ttgatcatgcagttgcagagaagaaagtagtaaaggagaagcgtaaaaaaatgggtcata 313

                                                                       
Query: 299 aaaaagcttccaagcctcctaggccaccaacaggtccaacgttggatgctgctgaccaga 358
           ||||| || |||||||||||||||| |||| ||| ||  | ||||| ||||| |||||||
Sbjct: 314 aaaaatctcccaagcctcctaggcctccaagaggcccgtcattggacgctgcagaccaga 373

                                                                       
Query: 359 agctcatcaaggagcttactgaactggccatgttgaagcgtgcaaaggtcgagcgaatga 418
           |||| ||||||||| |||||||||| || |||||||| ||||||| ||| ||||||||||
Sbjct: 374 agctgatcaaggagattactgaacttgctatgttgaaacgtgcaagggttgagcgaatga 433

                                                                       
Query: 419 aagccttgaagaaaatgaaagcagcaaaggcctcatcatctaatagcaatacgattgcta 478
           |||||||||||||||||||||| |||||||  ||  |||| ||| ||||||   |||| |
Sbjct: 434 aagccttgaagaaaatgaaagctgcaaaggggtcgccatccaatggcaatatatttgcaa 493

                                    
Query: 479 tggtgttcaccgttctcttttgtct 503
           |||||||||||| ||||||||||||
Sbjct: 494 tggtgttcaccgctctcttttgtct 518