Jatropha Genome Database

JcCB0580021.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0580021.10 + phase: 1 /partial
         (338 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29646.m001075 splicing factor u2af large subunit, putative            125   2e-28

>29646.m001075 splicing factor u2af large subunit, putative
          Length = 1650

 Score =  125 bits (63), Expect = 2e-28
 Identities = 117/135 (86%)
 Strand = Plus / Plus

                                                                        
Query: 1    tgcagagacttatgttacaacctcttcccactaaagtagtatgcctgactcaagttgtta 60
            ||||||| || ||||| |||||| | || |||||||| |||||||| ||||||||||| |
Sbjct: 1427 tgcagaggctaatgttgcaacctgtgcctactaaagttgtatgcctaactcaagttgtca 1486

                                                                        
Query: 61   atccggatgaacttaaagatgatgaggaatatgaagacatcttggaagatatgagaacag 120
             | ||||||| || |||||||| || || ||||||||||| ||||||||||||||||| |
Sbjct: 1487 ctgcggatgagctcaaagatgacgatgagtatgaagacatattggaagatatgagaactg 1546

                           
Query: 121  aaggcgggaaatttg 135
            |||||||||||||||
Sbjct: 1547 aaggcgggaaatttg 1561