Jatropha Genome Database

JcCB0578941.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0578941.10 - phase: 1 /pseudo/partial
         (565 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29962.m000052 conserved hypothetical protein                          313   6e-85
29653.m000290 conserved hypothetical protein                           52   4e-06

>29962.m000052 conserved hypothetical protein
          Length = 1125

 Score =  313 bits (158), Expect = 6e-85
 Identities = 394/470 (83%), Gaps = 7/470 (1%)
 Strand = Plus / Plus

                                                                        
Query: 99   ctggatctcctgctcagctgaccatcttttattgctggcacagtgaatgtgtatgatgat 158
            |||||||||||||||| ||||||||||||||| | ||| ||||| |||||||||||||||
Sbjct: 587  ctggatctcctgctcaactgaccatcttttatgg-tgggacagttaatgtgtatgatgat 645

                                                                        
Query: 159  atatcgcctgagaaggctcaggctatcttgttcttggctggaaatggctcttccatctcc 218
            |||||||||||||||||||| |||||| ||||||||||||||||||| | ||| ||  | 
Sbjct: 646  atatcgcctgagaaggctcaagctatcatgttcttggctggaaatggattttcaattcct 705

                                                                        
Query: 219  tccaacatggcacagccaaaaattcaagtccaggcaccaagctcaaagccaatagcaact 278
            || |||||| |||||||||||||||||||||||||||||| ||||||| || ||||||||
Sbjct: 706  tctaacatgtcacagccaaaaattcaagtccaggcaccaaactcaaaggcagtagcaact 765

                                                                        
Query: 279  gatattagtcctgtgagccaacctgtaactacaccaccctgttcctgtctgtccagccct 338
            | | ||||||| || | |||||||||||  |||||||| || ||| |||| || ||||||
Sbjct: 766  gttgttagtccggtcaaccaacctgtaataacaccaccttgctcccgtctctcaagccct 825

                                                                        
Query: 339  ttatctgtttcttcacatactggtgctcaatcggggagtggctctactagtactgaggag 398
            || |||||||| ||||||||||||||||| || ||||| ||||||||||||||||| || 
Sbjct: 826  ttgtctgtttcctcacatactggtgctcagtcagggagcggctctactagtactgaagaa 885

                                                                        
Query: 399  atcttgacagctaaaagcaccgga---actacaactcctgttagtaaactggagtctcca 455
            ||  || ||| ||||    | |||    | || ||||||||||| |||| |||  | |||
Sbjct: 886  attgtggcagttaaaccttctggagttccaaccactcctgttagcaaaccggacacacca 945

                                                                        
Query: 456  agaattgcaagcacaatgggatctgttgctgcaacaaccatgataccatctgcagtgccc 515
            | | |||||||  | ||||||||||   ||||| |||  ||||| ||||||   ||||| 
Sbjct: 946  aaacttgcaagtgccatgggatctgcacctgcagcaattatgatgccatct---gtgcct 1002

                                                              
Query: 516  caagctcgaaaggcgtccttagctcggtttttggagaagcgcaaggagag 565
            || || |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1003 caggcgcgaaaggcgtccttggctcggtttttggagaagcgcaaggagag 1052


>29653.m000290 conserved hypothetical protein
          Length = 777

 Score = 52.0 bits (26), Expect = 4e-06
 Identities = 53/62 (85%)
 Strand = Plus / Plus

                                                                       
Query: 150 tatgatgatatatcgcctgagaaggctcaggctatcttgttcttggctggaaatggctct 209
           ||||||||||| || |||||||||||||| |||||  || | ||||||||| |||| |||
Sbjct: 274 tatgatgatatttctcctgagaaggctcaagctatgatgctgttggctggacatggatct 333

             
Query: 210 tc 211
           ||
Sbjct: 334 tc 335