Jatropha Genome Database
- JcCB0575821.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0575821.10 + phase: 0 /partial
(555 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29889.m003245 sensor histidine kinase, putative 505 e-143
29848.m004559 two-component system sensor histidine kinase/respo... 52 4e-06
27647.m000179 two-component sensor histidine kinase bacteria, pu... 52 4e-06
29737.m001227 two-component system sensor histidine kinase/respo... 52 4e-06
>29889.m003245 sensor histidine kinase, putative
Length = 2049
Score = 505 bits (255), Expect = e-143
Identities = 480/555 (86%)
Strand = Plus / Plus
Query: 1 atgaatctcagtaacggaaagggatccatgtcaacggccagctctagtgtagcttggaaa 60
|||||||| |||||||| |||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 1 atgaatctgagtaacggtaagggatcgatgtcaacggccagctctagtgttgcttggaaa 60
Query: 61 gctggggatgttgtttccgatcagtttccgataggcctgcgagtattggttgttgatgat 120
||||| || |||||| ||||||| ||||| || | || || |||||||||||||||
Sbjct: 61 gctggagaggttgttcccgatcaatttccagctgggttacgggttttggttgttgatgat 120
Query: 121 gatccaacatgtctcatgatcttggagaagatgcttaaaacttgcctttataaagttact 180
|||||||| ||||| |||||||| ||||||||||||| ||||| ||||| |||||||
Sbjct: 121 gatccaacgtgtcttatgatcttagagaagatgcttaggacttgtctttacgaagttaca 180
Query: 181 aaatgcactcgagcagagcaagcattgtccatgctccgagagaacaaaaatgggtatgat 240
||||||| |||||||||| ||||| ||| |||||||||||||||||||||| ||||||
Sbjct: 181 aaatgcaatcgagcagagaccgcattatccttgctccgagagaacaaaaatggatatgat 240
Query: 241 attgttataagtgatgttcacatgccagacatggatggatttaaactccttgaatacatt 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 241 attgtcataagtgatgttcacatgccagacatggatggatttaaactccttgagcacatt 300
Query: 301 ggtctggagatggatctgcctgttatcatgatgtcagcagatgatgggaaaaatgttgtt 360
|| || ||||||||||||||||||||||||||||| || ||||| | |||| ||| |||
Sbjct: 301 gggctagagatggatctgcctgttatcatgatgtctgcggatgaggcaaaaagtgtagtt 360
Query: 361 atgaagggggtcacccatggtgcttgtgattacttgattaagccagttcgcatagaggcg 420
|||||||| || ||||||||||| |||||||| | || || ||||| ||||| |||||
Sbjct: 361 atgaagggagtaacccatggtgcgtgtgattatctcatcaaaccagtacgcattgaggca 420
Query: 421 ctgaaaaacatatggcagcacgtggttcggaagaaaaagaatgaaatgaaggacttggag 480
||||| |||||||||||||||||||| |||||||||| |||||| |||||| ||||||
Sbjct: 421 ctgaagaacatatggcagcacgtggtgcggaagaaaagaaatgaatggaaggatttggag 480
Query: 481 caatcaggaagcgtagaagaaggagatcggcagcagagacagtctgaggatgcagattat 540
||||||||||| |||||||| |||||| |||||| | ||| || |||||||| |||||
Sbjct: 481 caatcaggaagtgtagaagagggagataggcagccaaaacaatccgaggatgctgattac 540
Query: 541 tcttcttcagtcaat 555
|| ||||||| ||||
Sbjct: 541 tcgtcttcagccaat 555
>29848.m004559 two-component system sensor histidine kinase/response
regulator, putative
Length = 1992
Score = 52.0 bits (26), Expect = 4e-06
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 244 gttataagtgatgttcacatgccagacatggatggatttaaa 285
||||| ||||||||||| |||||||| |||||||| ||||||
Sbjct: 199 gttatcagtgatgttcatatgccagatatggatggttttaaa 240
>27647.m000179 two-component sensor histidine kinase bacteria,
putative
Length = 2010
Score = 52.0 bits (26), Expect = 4e-06
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 248 taagtgatgttcacatgccagacatggatggatttaaactccttga 293
||||||||||||| ||||| || |||||||| ||||| ||||||||
Sbjct: 278 taagtgatgttcatatgcctgatatggatggttttaagctccttga 323
>29737.m001227 two-component system sensor histidine kinase/response
regulator, putative
Length = 2031
Score = 52.0 bits (26), Expect = 4e-06
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 244 gttataagtgatgttcacatgccagacatggatggatttaaactccttga 293
||||| ||||||||| ||||||| ||||||||||| ||||| || |||||
Sbjct: 199 gttatcagtgatgttaacatgcctgacatggatggctttaagctacttga 248