Jatropha Genome Database

JcCB0568851.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0568851.10 - phase: 0 /partial
         (1026 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

27810.m000633 nucleic acid binding protein, putative                   74   2e-12
27810.m000634 nucleic acid binding protein, putative                   56   4e-07

>27810.m000633 nucleic acid binding protein, putative
          Length = 2178

 Score = 73.8 bits (37), Expect = 2e-12
 Identities = 147/184 (79%), Gaps = 6/184 (3%)
 Strand = Plus / Plus

                                                                        
Query: 316  aatcgttctggtcgttctaaaacactaactccttcaaacctcgaagaactcttttctgct 375
            ||||||||||||||||  || |  ||||||||||||||||| || || || |||| ||| 
Sbjct: 1471 aatcgttctggtcgtttaaagattctaactccttcaaaccttgatgatctgttttttgcg 1530

                                                                        
Query: 376  gagatctcttctcctcgatactctgatcaagca------gctgcagtgttctctcctaca 429
            |||| |||||||||||| ||  |||||||||||       | ||||| ||||| || |  
Sbjct: 1531 gagagctcttctcctcggtatgctgatcaagcattggcctcagcagttttctcgccaagc 1590

                                                                        
Query: 430  cataaatcagctgttctcaatcaattccagcagcagcagagcatgttatctccaatcaat 489
            || || || || ||||| ||||||||||||||||||||||| ||||| || |||||||| 
Sbjct: 1591 cacaagtctgcagttctgaatcaattccagcagcagcagagtatgttgtcaccaatcaac 1650

                
Query: 490  acaa 493
            ||||
Sbjct: 1651 acaa 1654



 Score = 69.9 bits (35), Expect = 3e-11
 Identities = 70/81 (86%), Gaps = 3/81 (3%)
 Strand = Plus / Plus

                                                                        
Query: 808  tcatttgagcttggtaacaatggggaggagccagacctgtcatgggtccaatctctggtt 867
            |||||||||||||||||   ||| |||||||| || || |||||||||||||| || |||
Sbjct: 1948 tcatttgagcttggtaa---tggagaggagcctgatctatcatgggtccaatcacttgtt 2004

                                 
Query: 868  aaagaatcacctcctgagatg 888
            |||||||| ||| ||||||||
Sbjct: 2005 aaagaatctcctactgagatg 2025


>27810.m000634 nucleic acid binding protein, putative
          Length = 2187

 Score = 56.0 bits (28), Expect = 4e-07
 Identities = 46/52 (88%)
 Strand = Plus / Plus

                                                                
Query: 442  gttctcaatcaattccagcagcagcagagcatgttatctccaatcaatacaa 493
            ||||||||||| ||||| |||||||| || |||||||| |||||||| ||||
Sbjct: 1606 gttctcaatcagttccaacagcagcaaagtatgttatcaccaatcaacacaa 1657



 Score = 54.0 bits (27), Expect = 2e-06
 Identities = 65/77 (84%), Gaps = 3/77 (3%)
 Strand = Plus / Plus

                                                                        
Query: 808  tcatttgagcttggtaacaatggggaggagccagacctgtcatgggtccaatctctggtt 867
            |||||||||||||||||   |||||||||||| || || || ||||| ||||| || |||
Sbjct: 1951 tcatttgagcttggtaa---tggggaggagcctgatctatcgtgggtgcaatcacttgtt 2007

                             
Query: 868  aaagaatcacctcctga 884
            |||||||| ||| ||||
Sbjct: 2008 aaagaatctcctactga 2024