Jatropha Genome Database

JcCB0550991.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0550991.10 - phase: 0 /partial
         (549 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29962.m000052 conserved hypothetical protein                          248   3e-65

>29962.m000052 conserved hypothetical protein
          Length = 1125

 Score =  248 bits (125), Expect = 3e-65
 Identities = 333/401 (83%), Gaps = 6/401 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggagagagattttttgggtttgaattcgaaagaaccactagctgttgttaaggaagag 60
           ||||||||||||||| |||| |||||||   ||||  || | || |||||||||||||||
Sbjct: 1   atggagagagattttctggggttgaattgtcaagattcattggccgttgttaaggaagag 60

                                                                       
Query: 61  gttaactctgatgcgtacaaagagataggatttagtaaaggttcaggtatacactggccc 120
           ||||||||||||| ||| ||||||||||| |||||||||| |||||| ||||| ||||||
Sbjct: 61  gttaactctgatgggtataaagagataggttttagtaaagtttcagggatacagtggccc 120

                                                                       
Query: 121 ttctccaacaaggtgtctgctcttcctcatttgaattctttcaaggttgctttagaagac 180
           |||  ||||||||| ||| | |||||||||||||   ||||||||| ||||  |||||| 
Sbjct: 121 ttcctcaacaaggtctcttcccttcctcatttgatgcctttcaaggctgctcaagaagat 180

                                                                       
Query: 181 aagactaaaaggattgtatctgactccttagcgtcccccggattcttgtccatctcaact 240
           ||||| || |||||||||||||| ||  ||| | || | ||||||||||||||| |||||
Sbjct: 181 aagaccaagaggattgtatctgattctatagtgccctctggattcttgtccatcgcaact 240

                                                                       
Query: 241 gcagatgcatctgaccctagccaaagacagtttatgcctgaaatccagaaatcattcaat 300
           | |||||| |  ||||||||||||| ||||    || ||||||| |||| |||||| |||
Sbjct: 241 gtagatgctttggaccctagccaaaaacag---gtggctgaaattcagagatcatttaat 297

                                                                       
Query: 301 catgacaggcaaggtgggagtcattttacattgactgcttatcctgcgcaacatgaggtg 360
           | ||| ||||||||||| | ||||||||||||  || ||||||||   |||||||| |||
Sbjct: 298 cttgaaaggcaaggtggcaatcattttacattagcttcttatcctttacaacatgatgtg 357

                                                    
Query: 361 cattctgttcatcatcctctcgatgtgaagatgtttccagt 401
           ||||| || |||||||||   ||||||||| ||||||||||
Sbjct: 358 cattccgtgcatcatcct---gatgtgaaggtgtttccagt 395