Jatropha Genome Database

JcCB0549901.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0549901.10 + phase: 1 /partial
         (500 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28094.m000179 pentatricopeptide repeat-containing protein, putative   222   2e-57

>28094.m000179 pentatricopeptide repeat-containing protein, putative
          Length = 1662

 Score =  222 bits (112), Expect = 2e-57
 Identities = 232/272 (85%)
 Strand = Plus / Plus

                                                                        
Query: 18   ttgatcaaaggttacgcgaagataaaagatcttgaaaatatgatgaaaaaatatgaagaa 77
            ||||||||||| || |||||||  ||  ||||||| || |||||| ||||||| || |||
Sbjct: 1276 ttgatcaaagggtatgcgaagactaataatcttgataagatgatggaaaaatacgaggaa 1335

                                                                        
Query: 78   atgcaattaagtggtgtaaaagcaaatcaaacgattttcacaacaataatggatgcacat 137
            ||||| ||||| ||||| |||||||||||||| ||||| || ||||||||||||||| ||
Sbjct: 1336 atgcagttaaggggtgtcaaagcaaatcaaacaatttttactacaataatggatgcatat 1395

                                                                        
Query: 138  ggtaagaacaaagattttggaagtgcagtctcttggtacaaggaaatggagcgccatgga 197
            ||||||||||| |||||||||||||| ||   ||||||||||||||||||||   | || 
Sbjct: 1396 ggtaagaacaaggattttggaagtgctgttatttggtacaaggaaatggagcagtacggg 1455

                                                                        
Query: 198  gttcctcctgaccagaaagcgaaaaacgtccttttatctttggccaaaacggcagatgaa 257
            |||||||||||||||||||| |||||| ||||| | |||||||||||||| |||||||||
Sbjct: 1456 gttcctcctgaccagaaagcaaaaaacatccttctgtctttggccaaaacagcagatgaa 1515

                                            
Query: 258  aaggaagaagctaaccaacttgtaggatattc 289
             || | |||||||| ||| | |||||| ||||
Sbjct: 1516 cagaaggaagctaatcaaatggtaggacattc 1547